BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC09RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1664 1132 0.0
>3x_Contig1664
Length = 15696
Score = 1132 bits (571), Expect = 0.0
Identities = 678/702 (96%), Gaps = 9/702 (1%)
Strand = Plus / Plus
Query: 45 cttgcataaatgatcacgaaaagtaaaacctttatttccattttttacatttataaaggc 104
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 13799 cttgcataaatgatcacgaaaag-aaaacctttatttccatttttcacatttataaaggc 13857
Query: 105 actctcttctcaattggaatcacaattgcattttgacatatataaagacagcaccttttg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13858 actctcttctcaattggaatcacaattgcattttgacatatataaagacagcaccttttg 13917
Query: 165 ttggaggaggcgagaaaaacagcgaaagacaaggtatattgttcggcgtaaagacttgtt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13918 ttggaggaggcgagaaaaacagcgaaagacaaggtatattgttcggcgtaaagacttgag 13977
Query: 225 aaattgaggaaacagggccataacctaaacaacacggatgatcatgttacaagttcctaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13978 aaattgaggaaacagggccataacctaaacaacacggatgatcatgttacaagttcctaa 14037
Query: 285 tgctacttgtgagtttggtttgaggccgtatatctcgcccgaagtaaatgcgttaaatcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14038 tgctacttgtgagtttggtttgaggccgtatatctcgcccgaagtaaatgcgttaaatcc 14097
Query: 345 atgctttatctcctgggtttgcgtcatatttgtggctcactttcatcgccatcggaggct 404
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 14098 atgctttatctcctgggtttgcgtcatatttgtggctcac-ttcatcgccatcggaggct 14156
Query: 405 tccagtatgtatcgttacgaaacaaggagacaggaccggctacttttgaaacaaaacggt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14157 tccagtatgtatcgttacgaaacaaggagacaggaccggctacttttgaaacaaaacggt 14216
Query: 465 tctggacttttagaaatatgagcattttccatgttatacatatgatcaatgttcttttcc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14217 tctggacttttagaaatatgagcattttccatgttatacatatgatcaatgttcttttcc 14276
Query: 525 aatgtgtactattgttaatccattttgagtt-ggttaaagatgaaccgacatggactaag 583
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 14277 aatgtgtactattgttaatcca-attgagttgggttaaagatgaaccgacatggactaag 14335
Query: 584 tggagcatttcattgaatttgntctatgttgctattggtttattgaactctacat-gtta 642
||||||||||||||||||||| ||||||||||||||| || ||||||||||||| ||||
Sbjct: 14336 tggagcatttcattgaatttgttctatgttgctattgtttatttgaactctacatggtta 14395
Query: 643 gcctattataagagttc-tgcgctcaggg-catggatta-tttattttatatttaacggt 699
||||||||||||||||| ||||||||||| ||||||||| |||||||||| | || ||
Sbjct: 14396 gcctattataagagttcttgcgctcagggccatggattattttattttatcatctacagt 14455
Query: 700 ttcctcgttgcctttgaaattggcc-aagatactttcatgct 740
||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct: 14456 ttcgtcgttgcctttgaaattggccaaagatacttccatgct 14497
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)