BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC11FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig874 809 0.0
3x_Contig769 119 1e-26
>3x_Contig874
Length = 1825
Score = 809 bits (408), Expect = 0.0
Identities = 471/483 (97%), Gaps = 7/483 (1%)
Strand = Plus / Minus
Query: 87 ctgcttattgggtaaatcc-aataggctgtgaaatatctctcccaatacagggttcaatg 145
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 504 ctgcttattgggtaaatcccaataggctgtgaaata-ctctcccaatacagggttcaatg 446
Query: 146 gcttcttgaccgctttaggggcaatatgccaccctgaaaggtaccatttaacaactttta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcttcttgaccgctttaggggcaatatgccaccctgaaaggtaccatttaacaactttta 386
Query: 206 taaacctttccaattcgtctttttccttatgagcttctagtaaaaggtctgggaattgca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaacctttccaattcgtctttttccttatgagcttctagtaaaaggtctgggaattgca 326
Query: 266 attggtttgcaattctctctaacatcgatttcttctctaaaatgaatgtaggtaaagtga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attggtttgcaattctctctaacatcgatttcttctctaaaatgaatgtaggtaaagtga 266
Query: 326 tccgtgacaaatcacaccctggcttcaattgagtaataatacccataaggatggattgac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccgtgacaaatcacaccctggcttcaattgagtaataatacccataaggatggattgac 206
Query: 386 ccgcatcatcattttcgtcgatatcatcggtatcctctacaatgtttggatcagcaacct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ccgcatcatcattttcgtcgatatcatcggtatcctctacaatgtttggatcagcaacct 146
Query: 446 gagggttgggctgttgaagagatatcngccggtagatgcactgatcttcgacttcagttt 505
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 145 gaggg-tgggctgttgaagagatatc-gccggtagatgcactgatcttcgacttcagttt 88
Query: 506 aaaa-gcatattggctattg-attatgatgntcaaataaagtctcttc-attaggaaaac 562
|||| |||||||| |||| ||||||||| ||||||||||||||||| |||||| ||||
Sbjct: 87 aaaaggcatattgctaattgtattatgatgttcaaataaagtctcttcaattaggtaaac 28
Query: 563 aca 565
|||
Sbjct: 27 aca 25
>3x_Contig769
Length = 2663
Score = 119 bits (60), Expect = 1e-26
Identities = 124/140 (88%), Gaps = 4/140 (2%)
Strand = Plus / Plus
Query: 569 tcaacgtagggactaaaacaaacggtattgaatcagttatcagttcaaactttctgtttt 628
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 12 tcaacgtagggactaaaacaaacggtattgaatcagttatcagtccaaac-ttctgtttt 70
Query: 629 atttaattgaaatatctaatttccaattgtttacaggattaaatgatctttcccggataa 688
||||| | |||||| || | |||| || || ||||||| ||||||||||| || ||||
Sbjct: 71 atttattagaaatacct-agttccgatggtatacagga-taaatgatcttcccgtaataa 128
Query: 689 atcctatcagttgatttgaa 708
|| |||||||||||||||||
Sbjct: 129 at-ctatcagttgatttgaa 147
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8104
Number of Sequences: 1807
Number of extensions: 8104
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)