BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC11RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1166 0.0
>3x_Contig1486
Length = 12131
Score = 1166 bits (588), Expect = 0.0
Identities = 648/667 (97%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 47 tttgaagcagcatcagacatttgatggataaagtatctacggagtcatcagagtgttcaa 106
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 21 tttgaagcagcatcagacataggatggataaagtatctacggagtcatcagagtgttcaa 80
Query: 107 tcagattacgttttgatgctgattgacatgaggaattcctggttattacctgtatcgttt 166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcagattacgttttgatgctgattgacatgaggaattcctggttattacctgtatcgtta 140
Query: 167 tctttccactatgatgagtatgtttctgagagggaaagtttggattctattcttactaga 226
||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 141 tctttccactatgatgagtatgtttctgagagggaaagtttggattctaacgagacgaga 200
Query: 227 agatttgtggtaccaattcgaaagatcgcaaactatgacgattctccaaattttaaggac 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatttgtggtaccaattcgaaagatcgcaaactatgacgattctccaaattttaaggac 260
Query: 287 aaacttatcccgagaattgatgaaagtaaacaatatctaacctctggactcactttaacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttatcccgagaattgatgaaagtaaacaatatctaacctctggactcactttaacc 320
Query: 347 caagaaaatgagatgagagaaaagttctggtgcagagaacacatcctaaaccgcttaaag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaaaatgagatgagagaaaagttctggtgcagagaacacatcctaaaccgcttaaag 380
Query: 407 tgcacatgggatactgccttaaatgaacatactgaagggtctgttgaatttcgccagttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacatgggatactgccttaaatgaacatactgaagggtctgttgaatttcgccagttt 440
Query: 467 gtagataaactcgataaacaagtgatctcactggtgtacccaccatcaaatgtgtttgat 526
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaaaaactcgataaacaagtgatctcactggtgtacccaccatcaaatgtgtttgat 500
Query: 527 atcaaagtaagtgcaagtgataccacagtaaaagtaggtacacctgtgcgtttgaacgta 586
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaaagtaagtgcaagtgaaaccacagtaaaagtaggtacacctgtgcgtttgaacgta 560
Query: 587 actgtgaacacgacgttacatacagatcttgttcctatcagatactatatactggacttt 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 actgtgaacacgacgttacatacagatcttgttcctatcagatactatatactggactat 620
Query: 647 ttcacaggttaatctgtgctaancgatcattc-aagtctattgtattccaaggccaaacg 705
||||||||| |||||||||| | ||||||| | |||||||| |||||||| |||||||||
Sbjct: 621 ttcacaggtaaatctgtgcttagcgatcatccaaagtctatcgtattccagggccaaacg 680
Query: 706 tcaacat 712
|||||||
Sbjct: 681 tcaacat 687
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6978
Number of Sequences: 1807
Number of extensions: 6978
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)