BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC12FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1164 0.0
>3x_Contig1542
Length = 13810
Score = 1164 bits (587), Expect = 0.0
Identities = 773/814 (94%), Gaps = 17/814 (2%)
Strand = Plus / Minus
Query: 90 cctggctttgatgaatccctttattcacgtgacctgttgttttgacaattgtcttgacgc 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12262 cctggctttgatgaatccctttattcacgtgacctgttgttttgacaattgtcttgacgc 12203
Query: 150 aacaaatagaacagatcaatctttctataattctaagccatatttaagtatctgcaaaga 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12202 aacaaatagaacagatcaatctttctataattctaagccatatttaagtatctgcaaaga 12143
Query: 210 aaaggaatgattattttatcaacaaatggtaagatatcaaactagaaggaaatcctaagt 269
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 12142 aaaggaatgattaacgcaacaacaaatggtaagatatcaaactagaaggaaatcctaagt 12083
Query: 270 tccattttctagtgaatcgtaataatggataatcattggctactaatgaagttttctagg 329
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12082 tccattttctagtgaatcgtaataatggataatcatgggctactaatgaagttttctagg 12023
Query: 330 attcgaaagaagcctcagcagcccctaaattcgttggcagaactatactcacgcatagcg 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12022 attcgaaagaagcctcagcagcccctaaattcgttggcagaactatactcacgcatagcg 11963
Query: 390 aatgaaacaatacattatttaggtttagaacaaagacatgagtacaaggcagcaattcaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11962 aatgaaacaatacattatttaggtttagaacaaagacatgagtacaaggcagcaattcaa 11903
Query: 450 ggatggaaactaatggctactgatgcaatgtataagctgaataatattgaccgtcaatat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11902 ggatggaaactaatggctactgatgcaatgtataagctgaataatattgaccgtcaatat 11843
Query: 510 cctaacttcgcttcatataccgaggaggaattgaatcttcagacaggaatacgtgagttg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11842 cctaacttcgcttcatataccgaggaggaattgaatcttcagacaggaatacgtgagttg 11783
Query: 570 tgcgataaagcaatgaataatgtggaaagagtgcagttgttatgtgaagatgtaccgaa- 628
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11782 tgcgataaagcaatgaaaaatgtggaaagagtgcagttgttatgtgaagatgtaccgaaa 11723
Query: 629 cctgataata-cagcggaaaaac-ttttctattg-aaatggtggtaaatttaag-tccat 684
|||||||||| |||||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct: 11722 cctgataataacagcggaaaaacattttctattggaaatggtggtaaatttaaggtccat 11663
Query: 685 acgtta-gagatgggatgtaca-gatgcgat-taaca-gagtggcagtgttttgggatta 740
|||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||
Sbjct: 11662 acgttaagagatgggatgtacaagatgcgatataacaagagtggcagtggtttgggatta 11603
Query: 741 ataaacgacaaga-tgttcaa-cggcgaacccgttaaatttt-ctggcttcaaatcttta 797
| ||||||||||| ||| ||| |||||||||| |||||||| ||| | ||||||| ||
Sbjct: 11602 aaaaacgacaagaatgtacaaacggcgaaccctgtaaatttttctgcatccaaatctcta 11543
Query: 798 c-agcagtaattcctcagaattcctttgaagactt-gattatgaggtaa-tttaattgat 854
| |||||||||||||||| || ||||||||||||| ||| ||||||||| ||||||||||
Sbjct: 11542 ccagcagtaattcctcaggatccctttgaagactttgataatgaggtaaatttaattgat 11483
Query: 855 ttaccgattgcg--aactgtcccctttgatcctt 886
||| || ||| ||||||||||| ||||||||
Sbjct: 11482 ttaacggatgccgaaactgtcccctatgatcctt 11449
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6981
Number of Sequences: 1807
Number of extensions: 6981
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)