BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZC12RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1716 789 0.0
>3x_Contig1716
Length = 19108
Score = 789 bits (398), Expect = 0.0
Identities = 451/466 (96%), Gaps = 2/466 (0%)
Strand = Plus / Plus
Query: 309 aaagaaaagaaagaaattgaaaatgactaagggaaggaaggctgataacccttctcaaat 368
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 62 aaagaaaagaaagaaagggaaaatgactaagggaaggaaggctgataacccgtctcaaag 121
Query: 369 caattttgataagaaggttataaactctgatggattcacgaacgaatcgttgaatagcta 428
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 caattttgataagaagggtataaactctgatggattcacgaacgaatcgttgaatagcta 181
Query: 429 atactatggaatacactccaacctaacaacagattttctcaactttgctcagtttctccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atactatggaatacactccaacctaacaacagattttctcaactttgctcagtttctccc 241
Query: 489 ctccagtgggcgatgagcaactcgctattcctgaacaaaataatccgttgtaattatatg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctccagtgggcgatgagcaactcgctattcctgaacaaaataatccgttgtaattatatg 301
Query: 549 caagcaagcaattataatcacaaaactagaatggatcatcagacgataagtaggttgaaa 608
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 caagcaagcaattataatcacaaaactagaatggatcatcagacgaaaagtaggttgaaa 361
Query: 609 agggactgtgagttatgtaaacgccagatttcaaacacaaggaacaactatatatatata 668
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 362 agggactgtgagttatgtaaacgcaagattccaaacacaaggaacaactatatatatata 421
Query: 669 tatcacttcatatcttgcttttagtttatactgacaaatccatacag-atttcaaggtcg 727
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 422 tatcacttcatatcttgcttttagtttatactgacaaatccatacagaatttcaaggtcg 481
Query: 728 gat-aaataatgcctcgtttttaacgatgtaaatacgacagaccta 772
|| ||||||||||| || || | ||||||||||||||||||||||
Sbjct: 482 tatgaaataatgcctggtattaaccgatgtaaatacgacagaccta 527
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,385
Number of Sequences: 1807
Number of extensions: 11385
Number of successful extensions: 1026
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)