BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD02FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig887 1348 0.0
>3x_Contig887
Length = 3466
Score = 1348 bits (680), Expect = 0.0
Identities = 730/744 (98%), Gaps = 2/744 (0%)
Strand = Plus / Plus
Query: 86 ctcattcctcttattaatttcccttttcgtcctcctatcgtagttccttgaatacatgta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 ctcattcctcttattaatttcccttttcgtcctcctatcgtagttccttgaatacatgta 2262
Query: 146 ttncatccttccaactaaaagatttaacggtactaaaattgccccatttcttgtagaata 205
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 tt-catccttccaactaaaagatttaacggtactaaaattgccccatttcttgtagaata 2321
Query: 206 cttttacttcctgataacttgtacccgaatagccaaaagttggcagaagtaaatttgatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 cttttacttcctgataacttgtacccgaatagccaaaagttggcagaagtaaatttgatt 2381
Query: 266 ccttgtatttttccatagaattaacatatccgatggaaacaatatcggcatccacagtat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2382 ccttgtatttttccatagaattaacatatccgatggaaacaatatcggcatccacagtat 2441
Query: 326 catcgacaacatctttgaacgctgccattccaagttttcgtccatttcttacctcatcgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 catcgacaacatctttgaacgctgccattccaagttttcgtccatttcttacctcatcgc 2501
Query: 386 ctgctaattttgcgaatattttaccaccaatctgatataaccctgctggagaatcatcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 ctgctaattttgcgaatattttaccaccaatctgatataaccctgctggagaatcatcga 2561
Query: 446 ttcgactgtacattccaccgtcaaagaatttcaatagttcttcagttgttactcctgtca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 ttcgactgtacattccaccgtcaaagaatttcaatagttcttcagttgttactcctgtca 2621
Query: 506 ctgagctatccacaacgttagagccatcagaatcgtaagcatcatctattgaatcattta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 ctgagctatccacaacgttagagccatcagaatcgtaagcatcatctattgaatcattta 2681
Query: 566 agatttggtccttgtgtgcatcgtaccacgctctttcttgggcatctgataatacttcgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 agatttggtccttgtgtgcatcgtaccacgctctttcttgggcatctgataatacttcgt 2741
Query: 626 atgcagctcttatttgggcaaatacttctgtagcctcctctatattggttctgttcttat 685
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 2742 atgcagctcttatttgggcaaatacttctgtagcctcttctatattgtttctgttcttat 2801
Query: 686 caggatggtacaatattgcttttttacggtacgctcgttttatatcggtatcggttgctt 745
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 2802 caggatggtacaataatgcttttttacggtacgctcgttttagatcggtatcggttgcat 2861
Query: 746 ctgatttgacatcaagaaggtcataataacctgtcttcatctcttatagcttttggattt 805
|||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |
Sbjct: 2862 ctgatttgacatcaagaaggtcataataacatgtcttcatctctattagc-tttggaatc 2920
Query: 806 ggactattacgatttgcgctattg 829
||||||||||| |||||||||||
Sbjct: 2921 tgactattacgaattgcgctattg 2944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6031
Number of Sequences: 1807
Number of extensions: 6031
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)