BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD02RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1560 0.0
>3x_Contig1755
Length = 22936
Score = 1560 bits (787), Expect = 0.0
Identities = 855/874 (97%), Gaps = 3/874 (0%)
Strand = Plus / Plus
Query: 48 tgtttcttttttttccatttgatcactacaatcattatcaaattctccgtctagatccaa 107
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8771 tgtttcttttttttccagttgatcactacaatcattatcaaattctccgtctagatccaa 8830
Query: 108 tgtcagagtggaaagtcgatcctgataacaggagaaggttgttacagttacaaaaagttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8831 tgtcagagtggaaagtcgatcctgataacaggagaaggttgttacagttacaaaaagttg 8890
Query: 168 gtggaaacaagaaatgccttgactgtggggctcataatccacaatgggcctcgcctaaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8891 gtggaaacaagaaatgccttgactgtggggctcataatccacaatgggcctcgcctaaat 8950
Query: 228 tcggtgttttcatttgtttggaatgtgccggtattcaccgaggattaggagtgcacatct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8951 tcggtgttttcatttgtttggaatgtgccggtattcaccgaggattaggagtgcacatct 9010
Query: 288 ccttcgttagatccatcactatggatcagttcaaatcagacgaactagttagaatggaaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9011 ccttcgttagatccatcactatggatcagttcaaatcagacgaactagttagaatggaaa 9070
Query: 348 acggtggtaatgacaaatttactgagtatctggaagaccatgggattgattcgagtttac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9071 acggtggtaatgacaaatttactgagtatctggaagaccatgggattgattcgagtttac 9130
Query: 408 ctcagaagttgaagtatgataacgttattgcttcggattataaagataaactaactgcta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131 ctcagaagttgaagtatgataacgttattgcttcggattataaagataaactaactgcta 9190
Query: 468 tctgtgaaagcaaagaatgggaagaacctgatcgctctgattttgacccaacccagctta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9191 tctgtgaaagcaaagaatgggaagaacctgatcgctctgattttgacccaacccagctta 9250
Query: 528 cagcaactaactctatgtccggtacccctcagctaaatggttcattgtctgaaaaacttg 587
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9251 cagcaactaactctaggtccggtacccctcagctaaatggttcattgtctgaaaaacttg 9310
Query: 588 gctctgaagatgcagtaaaccaaaaggagataaatgaatcctatttcgctacactcggtg 647
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9311 gctctgaagaagcagtaaaccaaaaggagaaaaatgaatcctatttcgctacactcggtg 9370
Query: 648 agataaacttacagataccagatcatataccgccatcccaaggtggtaaatatcaaggtt 707
||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9371 agaaaaacttacagaaaccagaacatataccgccatcccaaggtggtaaatatcaaggtt 9430
Query: 708 tcggaaacacgcctattattcaacataagataggatatcaagctgaacctggctctacta 767
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 9431 tcggaaacacgcctattattcaacataagaaaggaaatcaagctgaacctggctctacta 9490
Query: 768 cctttgactttggaaaactttcanaaggacccgcttggcactttcacaaagggttgaggc 827
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 9491 cc-ttgactttggaaaactttcaaaaggacccgcttggcactttcacaaagggttggggc 9549
Query: 828 ctattttcttcagccgtgtcgaaatcaatgggaagagttcaagaatctatcattaaacca 887
||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct: 9550 ctattttcttcagccgtgtcgaaatcaatggaagaagttcaagaatctatcatcaaacc- 9608
Query: 888 aaatgtcg-acaattctcacaaaaggatctatct 920
|||||||| ||||||||||||||| |||||||||
Sbjct: 9609 aaatgtcgaacaattctcacaaaaagatctatct 9642
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6661
Number of Sequences: 1807
Number of extensions: 6661
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)