BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD03FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1366 0.0
>3x_Contig1777
Length = 26319
Score = 1366 bits (689), Expect = 0.0
Identities = 727/739 (98%), Gaps = 1/739 (0%)
Strand = Plus / Plus
Query: 88 catggcttctcttatcaaagatgaaattgcaagcttctctacaaaaatacaatccatttg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11036 catggcttctcttatcaaagatgaaattgcaagcttctctacaaaaatacaatccatttg 11095
Query: 148 ctctgatcccgaaaacaattcagcgactacgtaaagatttggattatattttcttgccag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11096 ctctgatcccgaaaacaattcagcgactacgtaaagatttggattatattttcttgccag 11155
Query: 208 gtccaagaagtactcgcccacgtgaagtggggtagaatgacaattatcgattctaaaccc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11156 gtccaagaagtactcgcccacgtgaagtggggtagaatgacaattatcgattctaaaccc 11215
Query: 268 gtcaaaaatggttgcctgaagtcttgtatactctgacatcctctcccataaatacggaga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11216 gtcaaaaatggttgcctgaagtcttgtatactctgacatcctctcccataaatacggaga 11275
Query: 328 atcctcaggtgcggaaccgtaccttaatttcacacagtccccccagacaatcacttctct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11276 atcctcaggtgcggaaccgtaccttaatttcacacagtccccccagacaatcacttctct 11335
Query: 388 acgtaggtatgccttggagtcctttgatgcaaaatctactagtggattagagttccaaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11336 acgtaggtatgccttggagtcctttgatgcaaaatctactagtggattagagttccaaat 11395
Query: 448 ccagccattgttagccaatgcatattccttaccatctttggcaagcaatctggtgaaata 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11396 ccagccattgttagccaatgcatattccttaccatctttggcaagcaatctggtgaaata 11455
Query: 508 aggctcagttaatggcgattcaagagtgatttttcccatctttggaccatgatcatcaat 567
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 11456 aggctcagttaatggcgattcaggagtgatttttcccatctttggaccatgatcatcaat 11515
Query: 568 ccgcaaatactttatgcgattgtataattggtctaagattacgcgaacgtcctcatcgta 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11516 ccgcaaatactttatgcgattgtataattggtctaagattacgcgaacgtcctcatcgta 11575
Query: 628 ttccttgtacaagggtaaattcaattcatccaaaattttgcgtgcttcatttgcaacatt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11576 ttccttgtacaagggtaaattcaattcatccaaaattttgcgtgcttcatttgcaacatt 11635
Query: 688 gccattccattncttcccatgaagttgnctcaaaattgtgataaactgggatattatcaa 747
||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 11636 gccattccattcttccccatgaagttgtctcaaaattgtgataaacttggatattatcaa 11695
Query: 748 ggtatttgcaaatcttgtggataaagatcc-aagtcatcattatttcatgagctacgatt 806
||||||||||||||||||||||||||| || |||||||||||| | || ||||||||| |
Sbjct: 11696 ggtatttgcaaatcttgtggataaagaaccaaagtcatcattagtacaagagctacgaat 11755
Query: 807 gaaaccggccaattttacc 825
|||||||||||||||||||
Sbjct: 11756 gaaaccggccaattttacc 11774
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6217
Number of Sequences: 1807
Number of extensions: 6217
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)