BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD03RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1608 0.0
>3x_Contig1261
Length = 9103
Score = 1608 bits (811), Expect = 0.0
Identities = 904/928 (97%), Gaps = 6/928 (0%)
Strand = Plus / Plus
Query: 47 tcataattgatgtctcttcgatattcgctgaatgtattcgccgtgaccattatggtgaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 tcataattgatgtctcttcgatattcgctgaatgtattcgccgtgaccattatggtgaaa 4088
Query: 107 gtatttcagtgttgttcgactcattagcttctctatagtctaagactggagtaggtctaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 gtatttcagtgttgttcgactcattagcttctctatagtctaagactggagtaggtctaa 4148
Query: 167 gagaacaaaagggcaagcaaacaaccgtcgtcctgcttccgggcaacttaaatgctgtat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 gagaacaaaagggcaagcaaacaaccgtcgtcctgcttccgggcaacttaaatgctgtat 4208
Query: 227 cagtaggaattgatacgaagaaaaaatacaactacactgacacctcactcctgtacatta 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4209 cagtaggaattgatacgaagaaaaaatacaactacactgacacctcactcctgtacatta 4268
Query: 287 aatcgaaacaaagttacgcgcaaggtccaattagtacacacggttatgctaatttgggtt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4269 aatcgaaacaaagttacgcgcaaggtccaattagtacacacggttatgctaatttgggtt 4328
Query: 347 cttcaaatattactattggaaataatcaacacaaccacagtccctttaaaaaatggtact 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4329 cttcaaatattactattggaaataatcaacacaaccacagtccctttaaaaaatggtact 4388
Query: 407 ctaaagtctaagaatgaagatgatccaatatttattaaatagagttatgtctcattttat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389 ctaaagtctaagaatgaagatgatccaatatttattaaatagagttatgtctcattttat 4448
Query: 467 catttcattttctttcccaatcgatatcataaaatggtttttatcttctcttctatcttt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 catttcattttctttcccaatcgatatcataaaatggtttttatcttctcttctatcttt 4508
Query: 527 tgagcaccattaaactgagctgaaagtgcagttcaaaacactgttcgcgtcgtagaaaaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 tgagcaccattaaactgagctgaaagtgcagttcaaaacactgttcgcgtcgtagaaaaa 4568
Query: 587 caattatcttaaactaactntaaagactaaccccaatgatgcactcactttggattgcaa 646
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 caattatcttaaactaactttaaagactaaccccaatgatgcactcactttggattgcag 4628
Query: 647 gacttgcctcctgttgcattgttntacagtgtaacaaacagagtacacgtactaacggag 706
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 4629 gacttgcctcctgttgcattgttttacagtgtaacaaacagagacaacgtactaacggag 4688
Query: 707 cattggcagatcaaaacttaaaacataacctaattctcattttctttcaattcgaanggc 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4689 cattggcagatcaaaacttaaaacataacctaattctcattttctttcaattcgaaggca 4748
Query: 767 attagttcatatttgtcgtcagcttatgaattac-aatgatcgggaatatctctacca-g 824
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 4749 attagttcataattgtcgtcagcttatgaattacaaatgatcgggaatatctctaccagg 4808
Query: 825 tttagtttgacattgtaga-tatgtaaatcttgattt-accaaatttactgtagaatg-a 881
||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||| |
Sbjct: 4809 tttagtttgacattgtagattatgtaaatcttgatttaaccaaattaactgtaagatgaa 4868
Query: 882 tttgggcaaagtagacttgcacgacattctt-cgcaggttcatgtgtattcacgcatatt 940
||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 4869 tttggccaaagtagactcgcacgacattcttccgcaggttcatgtgtatccacgcatagt 4928
Query: 941 gtatctcacaccagtaaagattaaataa 968
||||||||||||||||||||| ||||||
Sbjct: 4929 gtatctcacaccagtaaagataaaataa 4956
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7282
Number of Sequences: 1807
Number of extensions: 7282
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)