BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1191 0.0
>3x_Contig1469
Length = 9240
Score = 1191 bits (601), Expect = 0.0
Identities = 797/842 (94%), Gaps = 17/842 (2%)
Strand = Plus / Minus
Query: 48 ttcactttctatgtaatggattctatctgtaagaacgctggttctccgtatacgatctat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6376 ttcactttctatgtaatggattctatctgtaagaacgctggttctccgtatacgatctat 6317
Query: 108 ttctctaagaatttgcataaattgttccgtaaaacttatttacttgtggataatcagact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6316 ttctctaagaatttgcataaattgttccgtaaaacttatttacttgtggataatcagact 6257
Query: 168 agaaccaagatgatttcaatgttcaaaacgtggatggtgccattgcctgcatgatacttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 6256 agaaccaagatgatttcaatgttcaaaacgtggatggtgccattgcctgcaggagacttg 6197
Query: 228 atgttcgatcatagttctttgaacagcatcgagaattttttgattaaggctagtgcgttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6196 atgttcgatcatagttctttgaacagcatcgagaattttttgattaaggctagtgcgttg 6137
Query: 288 catcagaaaagtgctactccgccggcgatacaacaacataccgctcacaacggaccggct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6136 catcagaaaagtgctactccgccggcgatacaacaacataccgctcacaacggaccggct 6077
Query: 348 gggtcgaatattactgtgaaatcgttactgtcggatattgataaattagcgctgattacg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6076 gggtcgaatattactgtgaaatcgttactgtcggatattgataaattagcgctgattacg 6017
Query: 408 cagtcgaagctagtaagtacaccggatgacgccaagttgcaggcaaaagtagcgatattg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6016 cagtcgaagctagtaagtacaccggatgacgccaagttgcaggcaaaagtagcgatattg 5957
Query: 468 aagcagttgagacaagagttgcagaaggaacggttggcaccggagtttttgtcgcaagtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5956 aagcagttgagacaagagttgcagaaggaacggttggcaccggagtttttgtcgcaagtt 5897
Query: 528 catcagcagctcaaacagatttttgcgcatgatcatcaacagcaaccatcaccacagcag 587
||||||||||||||||||||||||||||| || ||||||||||||| | || |||||||
Sbjct: 5896 catcagcagctcaaacagatttttgcgcaagaacatcaacagcaacaacaacaacagcag 5837
Query: 588 cagcagcagttgccattacnaaataactctcagtttctgccgccatcatctcaagggttc 647
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 5836 cagcagcagttgccattacaaaataactctcagtttctgccgccatcatctcaa-ggttc 5778
Query: 648 tgtaaacaatgatatgtctcgtggctcacttccagcgaatcggt-acaacgggctcgatg 706
|||||||||||||||||||||||||||||| | ||||| |||| ||||| |||||||||
Sbjct: 5777 tgtaaacaatgatatgtctcgtggctcactccaggcgaa-cggtaacaac-ggctcgatg 5720
Query: 707 tttcggaggaagcccttcattttattgcttccatttttgaaaccaactggacaactctaa 766
||||||||||| |||||| |||| ||| |||||||||| ||||||||| |||||||||
Sbjct: 5719 -ttcggaggaag-ccttcaatttaatgc-tccatttttg-aaccaactgaccaactctaa 5664
Query: 767 ccggnctaaattagcttttcaagttttggtttaacaggtttgagagaaaaagagctcttg 826
|| | || ||| ||| |||| ||||| | |||||| | |||||||||||||||||||||
Sbjct: 5663 cc-gtctcaataagc-tttctagttt--ggttaacatg-ttgagagaaaaagagctcttg 5609
Query: 827 cctgtaccctggaaaagccttcttttcctacccttagctgccaaattagaaacctgaatt 886
| || | |||||| ||| | ||| || ||| |||||||||||||||||| ||||||||||
Sbjct: 5608 catg-aacctggagaag-catctattacta-ccttagctgccaaattag-aacctgaatt 5553
Query: 887 tg 888
||
Sbjct: 5552 tg 5551
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6538
Number of Sequences: 1807
Number of extensions: 6538
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)