BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD05FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1394 0.0
>3x_Contig1771
Length = 25932
Score = 1394 bits (703), Expect = 0.0
Identities = 778/799 (97%), Gaps = 3/799 (0%)
Strand = Plus / Plus
Query: 96 ccttcaacgtatttgaatgctagagttatcagagacaatttcaagagacagcaagttgca 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18435 ccttcaacgtatttgaatgctagagttatcagagacaatttcaagagacagcaagttgca 18494
Query: 156 gacaatgaagtcactgtaaaggcattgaaattcattgctagaaatactactctacctcca 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18495 gacaatgaagtcactgtaaaggcattgaaattcattgctagaaatactactctacctcca 18554
Query: 216 aggtcgagaatggaagctcagttacaactttctgtgatgcctaactatacaagaatgaca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18555 aggtcgagaatggaagctcagttacaactttctgtgatgcctaactatacaagaatgaca 18614
Query: 276 caaatcaagaacagatgtattgaaacgggacactccagatctgttctgagtgatttcaga 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18615 caaatcaagaacagatgtattgaaacgggacactccagatctgttctgagtgatttcaga 18674
Query: 336 ttgtgtagatcgcaattcagagaacttgccatgaaaggtgatctacctggtgtgaagaag 395
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18675 ttgtgtagatcgcaattcagagaacttgccaggaaaggtgatctacctggtgtgaagaag 18734
Query: 396 ggtgtatggtagatgcagtttatcatcttttgttccctgatactgaggttagtaaaagtt 455
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18735 ggtgtatggtagatgcagtttagcatcttttgttccctgatactgaggttagtaaaagtt 18794
Query: 456 ggaatctttctctcccgcatgcatgtaaatatttttaattaactcaacatatataaagct 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18795 ggaatctttctctcccgcatgcatgtaaatatttttaattaactcaacatatataaagct 18854
Query: 516 tgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtg 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18855 tgtgtatagacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtg 18914
Query: 576 gcaaagcaagtgacatttataagatgagaaagtgcagtatagtggcgataatatttaagt 635
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 18915 gcaaagcaagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagt 18974
Query: 636 ttcttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaa 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18975 ttcttacaaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaa 19034
Query: 696 acagaagagaggttgaagataaaatgtcatggagggatggtcactttgatacagatggga 755
||||||||||||| ||||| ||||||||| |||||||||||||||| | ||||||| |
Sbjct: 19035 acagaagagaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaa 19094
Query: 756 accaagaaaagatcgaggagaaaaaattaggaaatgcaacggatattaattgctgacatt 815
|| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 19095 acaaagaaaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatt 19154
Query: 816 tgtatattaaaaa-tgatcaattag-atcaaatgaat-tggtttggtcgtcttccctctt 872
||||||||||||| ||||||||||| | ||||||||| ||||||| ||||||||||||||
Sbjct: 19155 tgtatattaaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctctt 19214
Query: 873 ctttttttttggaacttta 891
||||||||||||| |||||
Sbjct: 19215 ctttttttttggatcttta 19233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8164
Number of Sequences: 1807
Number of extensions: 8164
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)