BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD07FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1504 932 0.0
>3x_Contig1504
Length = 9288
Score = 932 bits (470), Expect = 0.0
Identities = 621/664 (93%), Gaps = 7/664 (1%)
Strand = Plus / Minus
Query: 87 tttggaactttggttataaaatgatacgattttcttaattattgctccttcttcattttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7468 tttggaactttggttataaaatgatacgattttcttaattattgctccttcttcattttc 7409
Query: 147 atataaatgtatatatataaaatcttttttgttcgtgctttttaattatttgtaataaca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7408 atataaatgtatatatataaaatcttttttgttcgtgctttttaattatttgtaataaca 7349
Query: 207 atcagtattaattcatttacttaagtttactaaattttccttgctagaattagagtgttg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7348 atcagtattaattcatttacttaagtttactaaattttccttgctagaattagagtgttg 7289
Query: 267 tacaatctgaaattaaacaccatcatcacatcacaacagagggaaaaggaaagcataagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 tacaatctgaaattaaacaccatcatcacatcacaacagagggaaaaggaaagcataagt 7229
Query: 327 aacaaaaaattgagaaattagaagaactaagactgagtggttgtagtgtgtaatatagta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 aacaaaaaattgagaaattagaagaactaagactgagtggttgtagtgtgtaatatagta 7169
Query: 387 acaacagtaagggatgtgtaaaatgtataattaaaactggggaagataagatagaataac 446
|||||||||||||||||||||||||||||||| | ||||||||||| |||| |||| |||
Sbjct: 7168 acaacagtaagggatgtgtaaaatgtataattcacactggggaagaaaagaaagaaaaac 7109
Query: 447 acctaatgagaattct-acaaaaaattggcgaagtggaaatatcaagacggtgcatcctt 505
|||||||||||||||| ||||||||||||||||||||||| | |||||||| ||| ||||
Sbjct: 7108 acctaatgagaattctaacaaaaaattggcgaagtggaaaaaccaagacggggcaacctt 7049
Query: 506 caacctcgaatgtgtcacgaagtatggtccncccttctcttcttcttcttcttctaaacc 565
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 7048 caacctcgaatgtgtcacgaagtat-gttctcccttctcttcttcttcttcttctaaacc 6990
Query: 566 ctttcaagaaagaa-caaaccaaaacccgttttttattaaatcctgggactatcagttaa 624
|||||||||||||| |||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 6989 ctttcaagaaagaaccaaaccaaaaccgtttttttattagatcctgtgactatcagttag 6930
Query: 625 ccatagtccagccatatttttata--ttagaattagtggagtagtagtagtttaatcacc 682
| |||||| ||| ||| | ||| | | | ||| |||| |||||||||||| |||||||
Sbjct: 6929 cgatagtcgagcaatagtattacaattaacaataagtgtagtagtagtagtataatcacg 6870
Query: 683 ggggaacataattaaatagggtaaaaaaaccaacttttaagggattattaagtaaaaaaa 742
||||| ||||| ||||| ||||||| ||| ||| |||||| ||| || |||||||||||
Sbjct: 6869 ggggacaataataaaata-ggtaaaacaacaaac-tttaagtgataataaagtaaaaaaa 6812
Query: 743 aaat 746
||||
Sbjct: 6811 aaat 6808
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,005
Number of Sequences: 1807
Number of extensions: 12005
Number of successful extensions: 392
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)