BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD08FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1301 1187 0.0
>3x_Contig1301
Length = 6951
Score = 1187 bits (599), Expect = 0.0
Identities = 658/677 (97%), Gaps = 1/677 (0%)
Strand = Plus / Minus
Query: 87 ttttcttccagttggatatatattattaggcctaccttcgaatggtaatagactttgctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 ttttcttccagttggatatatattattaggcctaccttcgaatggtaatagactttgctt 2762
Query: 147 tagactatcaccctgaacaaaaagttgacaggctttggctacagccggattcgttaagaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 tagactatcaccctgaacaaaaagttgacaggctttggctacagccggattcgttaagaa 2702
Query: 207 gttatgaatctcactagtgggagcataaatgttgctaaattgaaaaatatcggagagaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 gttatgaatctcactagtgggagcataaatgttgctaaattgaaaaatatcggagagaat 2642
Query: 267 aacacagttgtagtacatcaaatgtttaatgcattcttgaactaattcaacatcacttcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 aacacagttgtagtacatcaaatgtttaatgcattcttgaactaattcaacatcacttcg 2582
Query: 327 agcactgactgcaatttgagctacgctattaattccattgatatacggtacaattttgac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 agcactgactgcaatttgagctacgctattaattccattgatatacggtacaattttgac 2522
Query: 387 catcgttggatcccaattcacatctattatatcagagaggtttactacagctatcggtac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2521 catcgttggatcccaattcacatctattatatcagagaggtttactacagctatcggtac 2462
Query: 447 gtcttctaccgagatgttcgaacttggaggagttctaacgggaaagagtttattgtcaat 506
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2461 gtcttctaccgagatgttcgaacttggaggagttctaacgggaaagagtttaatgtcaat 2402
Query: 507 agaatttccttcatcgattgggatcaaacactcgnaataattgttcaaatcaagaaacaa 566
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2401 agaatttccttcatcgattgggatcaaacactcggaataattgttcaaatcaagaaacaa 2342
Query: 567 cttcatcaaaagatctttcatgatcnaactcttttggtttttagctagttcttttatgat 626
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2341 cttcatcaaaagatcttcaatgatcaaactcttttggtttttagctagttcttttatgat 2282
Query: 627 ttc-aaatatttctccccatcgtcccctgtcgatttattatcggattgttctgatattgt 685
||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2281 ttctaaatatttctccccatcgtcccctgtcgatttaatatcggtatgttctgatattgt 2222
Query: 686 tttaaatcccatttctgtagactgttcaccagcatttgaattctttgacttcaattgaaa 745
| || ||||||| ||||||||||| ||| ||||||| |||| |||||||||||||||||
Sbjct: 2221 tatagatcccatctctgtagactgatcagcagcattagaatcgtttgacttcaattgaaa 2162
Query: 746 attccctgggttctgct 762
|| | ||||||||||||
Sbjct: 2161 atacactgggttctgct 2145
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8139
Number of Sequences: 1807
Number of extensions: 8139
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)