BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD08RM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1162 0.0
>3x_Contig1487
Length = 9002
Score = 1162 bits (586), Expect = 0.0
Identities = 659/677 (97%), Gaps = 5/677 (0%)
Strand = Plus / Plus
Query: 34 gctttacaatcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaag 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7397 gctttacaatcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaag 7456
Query: 94 ttagaaagaaaagactacaagatctttctttaacagtcctgagtaagggttaatatagat 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7457 ttagaaagaaaagactacaagatctttctttaacagtcctgagtaagggttaatatagat 7516
Query: 154 tcatttcagtgctgttactagacatcaattttaagacgattgctctaatttgatattgaa 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 7517 tcatttcagtgctgttactagacatcaattttaagacgattgctctaatttgatagtgaa 7576
Query: 214 atataaagggctgtttctactgctcaacatattatattgatctgaaaagttttccaactt 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7577 atataaagggctgtttctactgctcaacatattatattgatctgaaaagttttccaactt 7636
Query: 274 ttggcgtgctgattgagagcatttatcgatattaggtatcataatctagtgactgagtag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7637 ttggcgtgctgattgagagcatttatcgatattaggtatcataatctagtgactgagtag 7696
Query: 334 agggttttggaaactaggtgaaatatatagattattttgtcgccagtgctttttcgttgc 393
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 7697 agggttttggaaactaggtgaaata-atagattattttgtcgccagtgctttttcgttgc 7755
Query: 394 tgaagagcggattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7756 tgaagagcggattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaac 7815
Query: 454 ggaaatcggaggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaaga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7816 ggaaatcggaggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaaga 7875
Query: 514 tcctgatacgcctttcaatangatccatggatctactaatggatcctgaattgggatacc 573
||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 7876 acctgaaacgcctttcaataggatccatggatctactaatggatcctgaattggaatacc 7935
Query: 574 gtgtttcatcacgacaa-gaacaggaacagcaacggatcaagatacaggaacgccctaca 632
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 gtgtatcatcacgacaaggaacaggaacagcaacggatcaagatacaggaacgccctaca 7995
Query: 633 tcgctaccttgtcgat-aaaactggaactcctaattc-gaacaaggggaacaagattttg 690
||||||||| |||||| ||||||| |||| |||| || ||||||||||||||||| | ||
Sbjct: 7996 tcgctacctcgtcgataaaaactgaaactactaaatcagaacaaggggaacaagagtatg 8055
Query: 691 g-aatgatgattatcag 706
| ||||||||| |||||
Sbjct: 8056 gaaatgatgataatcag 8072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8275
Number of Sequences: 1807
Number of extensions: 8275
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)