BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD09FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1526 1241 0.0
>3x_Contig1526
Length = 11842
Score = 1241 bits (626), Expect = 0.0
Identities = 698/719 (97%), Gaps = 3/719 (0%)
Strand = Plus / Minus
Query: 86 tgataatcttggggaaatgaatgctgataacggtatctttgacattgaagtagcatccag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5456 tgataatcttggggaaatgaatgctgataacggtatctttgacattgaagtagcatccag 5397
Query: 146 ttgtaaagagcgtagtcttgcttcaacttcgctttcagtcccaacttgtgacgagcactc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 ttgtaaagagcgtagtcttgcttcaacttcgctttcagtcccaacttgtgacgagcactc 5337
Query: 206 gattcctaggatttttctatcttgagtcgatgctcgaacaggaagagcattgatgaaaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 gattcctaggatttttctatcttgagtcgatgctcgaacaggaagagcattgatgaaaac 5277
Query: 266 ctctattcctctatttctcatagctcttgaaagttctccaaatttaggatccatagttaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 ctctattcctctatttctcatagctcttgaaagttctccaaatttaggatccatagttaa 5217
Query: 326 gaataatctaaaatcgcgatgtggctttaccactctgggttttccatcggtcaaactaca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 gaataatctaaaatcgcgatgtggctttaccactctgggttttccatcggtcaaactaca 5157
Query: 386 ttcgtttatcatcaaagaaccatctgtttctaatagtgaattgattctatcgagaactga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5156 ttcgtttatcatcaaagaaccatctgtttctaatagtgaattgattctatcgagaactga 5097
Query: 446 tggagagcaaagattggcattgtctaaaatcaaccaatgaccctcctccacagccttgac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5096 tggagagcaaagattggcattgtctaaaatcaaccaatgaccctcctccacagccttgac 5037
Query: 506 tagcataccgtcaaaccattcatatttcacggctgcaggctntttcatgtgctcgctcaa 565
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 5036 tagcataccgtcaaaccattcaaatttcacggctgcaggctttttcatgtgctcgctcaa 4977
Query: 566 atc-tggatttncatattaatttcgtctatcggagaatgcacttgagttaagggatagaa 624
||| || |||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 4976 atcttgaatttccatattaatttcgtctatcgtagaatgcacttgagttaaggaatagaa 4917
Query: 625 cttttggaataagtggacatagtcagtgaaattaaagggagacactgatgatttcttaat 684
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 4916 cttttggaataagtggacaaagtcagtgaaattaaaggaagacactgatgatttcttaat 4857
Query: 685 taaatcctacaaagc-aatgctggaggaagtggcttagtatctgttcctgtggaaagatt 743
||||| |||||||| |||||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 4856 aaaatcatacaaagcaaatgctggagaaagtgcttcagtatctgttcctgtggaaagatt 4797
Query: 744 gatggtaatttagttgttgcaagatttcaaaaagtttctgaatgatggncgcaactttt 802
|||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 4796 gatggtaa-ttagttgttgcaagagttcagaaagtttctgaatgatgttcgcaactttt 4739
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6739
Number of Sequences: 1807
Number of extensions: 6739
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)