BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD09RM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1712 1021 0.0
>3x_Contig1712
Length = 23668
Score = 1021 bits (515), Expect = 0.0
Identities = 643/675 (95%), Gaps = 8/675 (1%)
Strand = Plus / Plus
Query: 43 cttctctcttcgttactaggattttttgctatcatttcccctatgacatctgatgacaat 102
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8830 cttctctcttcgttactaggattttttgctatcatttcccctatgacaactgatgacaat 8889
Query: 103 tccttttcaatgatgtaaagctcttgcagtacattgaactacattctcaaagctcatggt 162
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8890 -ccttttcaatgatgtaaagctcttgcagtacattgaactacattctcaaagctcatggt 8948
Query: 163 tttctttaatatgaagtatgcatcctttcttttttttttttttcaagttttagtttctta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8949 tttctttaatatgaagtatgcatcctttcttttttttttttttcaagttttagtttcata 9008
Query: 223 tcatcgcgtctctttggtactgccaaagaaagtacggagtaaaatttacgaaacatatgc 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9009 acatcgcgtctctttggtactgccaaagaaagtacggagtaaaatttacgaaacatatgc 9068
Query: 283 gagaatcgaaaccgtcattgatttgatgtaaaatgctggaagaagttttccaccaagaat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9069 gagaatcgaaaccgtcattgatttgatgtaaaatgctggaagaagttttccaccaagaat 9128
Query: 343 attcgtcaaacttcctttcatctcgctgcctcattgttgtacatttttntgtacattgtt 402
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 9129 attcgtcaaacttcctttcatctcgctgcctcattgttgtacattttt-tgtacattgtt 9187
Query: 403 tgagattttcgcttgatctgcagtttaacaaggttatgaaaatcataccaatggtttcga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9188 tgagattttcgcttgatctgcagtttaacaaggttatgaaaatcataccaatggtttcga 9247
Query: 463 agacaatatccgaaaacgctcaacgtaagagagtaaataagggaaagaattcatttcttg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9248 agacaatatccgaaaacgctcaacgtaagagagtaaataagggaaagaattca-ttcttg 9306
Query: 523 taaatgcccagcatcgcgccctagtggttcaaaaactgctttcatttaggatttaccttt 582
|||||||| |||||||| ||||||| ||||||| |||||||||| |||||||||||||
Sbjct: 9307 taaatgccaggcatcgcg-cctagtgtttcaaaacttgctttcattaaggatttaccttt 9365
Query: 583 gcattaagctggttgtgcattaggagcgagcagcccagttttacttttt-gtttagcggt 641
||| || |||| | ||||| ||||||||||| |||| |||||||||| |||||||| |
Sbjct: 9366 gcaataggctgttgttgcatagggagcgagcaggccaggtttactttttggtttagcgtt 9425
Query: 642 gatccaacgttccaaagtaacgtgaataccaa-cgatcccattggtcaacaaggttatca 700
|||||||||| ||||||||||||||| ||||| ||||| ||| | ||||| |||||||||
Sbjct: 9426 gatccaacgtaccaaagtaacgtgaaaaccaaccgatcacatcgttcaac-aggttatca 9484
Query: 701 cgtttcctgaaattg 715
|| ||||||||||||
Sbjct: 9485 cg-ttcctgaaattg 9498
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,254
Number of Sequences: 1807
Number of extensions: 22254
Number of successful extensions: 464
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)