BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD10FM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1262 1080 0.0
>3x_Contig1262
Length = 7137
Score = 1080 bits (545), Expect = 0.0
Identities = 646/672 (96%), Gaps = 6/672 (0%)
Strand = Plus / Plus
Query: 87 ccagcagttctagtagccgctggagcctttgatgctgctgcccaagccttgaataagcag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ccagcagttctagtagccgctggagcctttgatgctgctgcccaagccttgaataagcag 194
Query: 147 gtagccgttgtaaacttcgaacccctcaggacaccattcattgatatatacgatggtgca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gtagccgttgtaaacttcgaacccctcaggacaccattcattgatatatacgatggtgca 254
Query: 207 agaacttatatgagtgctacaccaaatgaattaccttcaattattggatacatccgagct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agaacttatatgagtgctacaccaaatgaattaccttcaattattggatacatccgagct 314
Query: 267 gatgccgatgaggaggacaaatctaaaatactaccatttgttcctggcgtttctgtagtc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gatgccgatgaggaggacaaatctaaaatactaccatttgttcctggcgtttctgtagtc 374
Query: 327 accacgaagttgaacgagggattcaaagcatttaaggctaacaaattggaagttgctatc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 accacgaagttgaacgagggattcaaagcatttaaggctaacaaattggaagttgctatc 434
Query: 387 gagcacttccgagacgttatctatgccatagctttgttagcagttactgacaaagaagat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gagcacttccgagacgttatctatgccatagctttgttagcagttactgacaaagaagat 494
Query: 447 gaaacaacagcacatactgcacttgcaactgctcgtgaatacatcttangtctttctatg 506
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 495 gaaacaacagcacaaactgcacttgcaactgctcgtgaatacatcttaggtctttctatg 554
Query: 507 gagctagaacgtcgtgctctacctgccaatgacgttaagcgtaccctgg-attggcagca 565
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 555 gagctagaacgtcgtgctctacctgccaatgacgttaagcgtaacctggaattggcagca 614
Query: 566 tactttaacaagacaaaacttctacctgtgcataagaataatgctttgaatgttgctatg 625
||||| | || ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 615 tacttcagcaggacaaaacttctacctgtgcatagaagtaatgctttgaatgttgctatg 674
Query: 626 acccaatcattcaaaaacagaacctttgtattagcatccttttttcgcaggccgaattcc 685
||||||||||||||||||| | |||||||||||||||| | ||||||||| ||||||||
Sbjct: 675 acccaatcattcaaaaacaagaactttgtattagcatcc-tatttcgcagg-cgaattcc 732
Query: 686 tcaagattattaccttaaggtggccgtggctgaccaagcctaaaaaaatcaaaccaaagg 745
|||||||||||| | | ||||| |||| |||||||||| || | ||||||||| ||||||
Sbjct: 733 tcaagattatta-catcaggtgcccgt-gctgaccaag-ctcagaaaatcaaagcaaagg 789
Query: 746 ctgattccatgg 757
||||||| ||||
Sbjct: 790 ctgattcgatgg 801
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6961
Number of Sequences: 1807
Number of extensions: 6961
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)