BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD10RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig265 712 0.0
3x_Contig342 363 e-100
>3x_Contig265
Length = 1170
Score = 712 bits (359), Expect = 0.0
Identities = 406/417 (97%), Gaps = 4/417 (0%)
Strand = Plus / Plus
Query: 340 agatggtgtgcagagaaggaaggtcagtggtcaaacatcggtaaggttttaggtagaatg 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 agatggtgtgcagagaaggaaggtcagtggtcaaacatcggtaaggttttaggtagaatg 73
Query: 400 ccagaagattgtagggatcgttggagaaattatgtcaagtgtggtccaaatagagccgcc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ccagaagattgtagggatcgttggagaaattatgtcaagtgtggtccaaatagagccgcc 133
Query: 460 aataaatggtctgtggaggaagaagaaaaattgaaaaatgttattcatcanatgttggat 519
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 134 aataaatggtctgtggaggaagaagaaaaattgaaaaatgttattcatcaaatgttggat 193
Query: 520 aacgccagcactgcgtacgaagatggtgaagatgatgaaatgaaagattcatctactaag 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aacgccagcactgcgtacgaagatggtgaagatgatgaaatgaaagattcatctactaag 253
Query: 580 atagaggattctggagatgctgatatgctggatgttcaggattctgantag-aaccctct 638
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 254 atagaggattctggagatgctgatatgctggatgttcaggattctgataagaaaccctct 313
Query: 639 atttcgaactctaaaaagaagcc-gccgc-aaagatattataaactggactgttggaagt 696
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||
Sbjct: 314 atttcgaactctaaaaagaagccagccgcaaaagatattataaactggactgttgtaagt 373
Query: 697 gaacaaatgggaggatcaagatcccgttttcaatgtcggtaataaatggaaccaatt 753
||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||
Sbjct: 374 gaacaaatgggaggatcaagatcccgtattcaatgtc-gttataaatggaacaaatt 429
>3x_Contig342
Length = 2225
Score = 363 bits (183), Expect = e-100
Identities = 256/267 (95%), Gaps = 10/267 (3%)
Strand = Plus / Minus
Query: 46 gcttcccatattatcaatccggcaacccaatcgaatggtaaatcttt-cga-tgagtctg 103
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 276 gcttcccatattatcaatccggcaacccaatcgaatggtaaatctttgcgaatgagtctg 217
Query: 104 aagaagaagctctagaacaattcatcaaagaataccaaaagat-cagaggcctctcgaga 162
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 216 aagaagaagctctagaacaattcatcaaagaataccaaaagatgcagaggcctctcgaga 157
Query: 163 cgtcaaatttgtgaaagaatttggtccaacgaaagaa-ggaaagat-gacttctggacta 220
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 156 cgtcaaatttgtgaaagaatttggtccaacgaaagaagggaaagatggacttctggacta 97
Query: 221 atatctgta-gggtgttgccttacag-gacaagatcttcgatttacaaacacgttcgtcg 278
||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 96 atatctgtaggggtgttg-cttacagagacaagatcttcgatttacaaacacgttcgtcg 38
Query: 279 taagtatcacatttttgaacaacgtgg 305
||| |||||||| |||||||||||||
Sbjct: 37 -aag-atcacattattgaacaacgtgg 13
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8415
Number of Sequences: 1807
Number of extensions: 8415
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)