BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD12FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig863 1181 0.0
>3x_Contig863
Length = 2811
Score = 1181 bits (596), Expect = 0.0
Identities = 625/634 (98%), Gaps = 1/634 (0%)
Strand = Plus / Minus
Query: 86 tacggccaatgatgtctactaggaaagtgtgagatctgatgatatccaaagtagtgatac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tacggccaatgatgtctactaggaaagtgtgagatctgatgatatccaaagtagtgatac 578
Query: 146 ccataaccttaccggcttggaacttgcccatgctttgcaaagtttcgtaaacaattggaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccataaccttaccggcttggaacttgcccatgctttgcaaagtttcgtaaacaattggaa 518
Query: 206 ccaacgagttcactgggtttgaaatgacaaggattctggcatctggtgcatgttcagcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccaacgagttcactgggtttgaaatgacaaggattctggcatctggtgcatgttcagcaa 458
Query: 266 tttgcacagttagagacttgatgatcttggcgttgatcttgaacaagtcgtcacgtgaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttgcacagttagagacttgatgatcttggcgttgatcttgaacaagtcgtcacgtgaca 398
Query: 326 tacctggcttccttggaataccggccgggattatgaccaattgggcacctttcaacgctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacctggcttccttggaataccggccgggattatgaccaattgggcacctttcaacgctt 338
Query: 386 gaccaatctctgcggtattgaaaccttcagacgtggagttagtgtcgatatgagacaaat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaccaatctctgcggtattgaaaccttcagacgtggagttagtgtcgatatgagacaaat 278
Query: 446 cggtagcattaccgtgggacagcttcaaatcgtacaatctcaaacttgatacatgatggt 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 277 cggtagcattaccgtgggacagcttcaaatcgtacaatctcaaacttgatacatgagggt 218
Query: 506 ctagtttcaacaacaacgaaagtggttgaccaataccaccatatgatccaagaactgnta 565
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
Sbjct: 217 ctagtttcaacaacaacgaaagtggttgaccaataccaccagatgagccaagaactgtaa 158
Query: 566 cacttaccatgactgcttgaaaacttgactattatcttaccggttctacctatttgaact 625
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 157 cacttaccatgactgcttgaaaacttgactattactttaccggttctacctatttgaact 98
Query: 626 gatagtatncctgaaatcagaagaagaaagagatgatgatatttatatcaataagtgctg 685
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 gatagtatccctgaaatcagaagaagaaagagatgatgatatttatatcaataagtgctg 38
Query: 686 aaagtctctttcaac-aaatatcctaactctagg 718
||||||||||||||| ||||||||||||||||||
Sbjct: 37 aaagtctctttcaacaaaatatcctaactctagg 4
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,788
Number of Sequences: 1807
Number of extensions: 19788
Number of successful extensions: 1571
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)