BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZD12RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1400 894 0.0
>3x_Contig1400
Length = 8536
Score = 894 bits (451), Expect = 0.0
Identities = 554/580 (95%), Gaps = 7/580 (1%)
Strand = Plus / Minus
Query: 227 cctcaattgatcattgctactcatatctcgtttgcactattgctttgcgtgttgggatcg 286
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8536 cctcaattgatcattgctactcatatctcgtttgcactaatgctttgcgtgttgggatcg 8477
Query: 287 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8476 cagatctatttaaccaaaaatatccatttcatcgcattaacgattatcgccactctacta 8417
Query: 347 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8416 tggatcaccgtgacgtggttcatctacgaattacaaaacacaaagcttgttaccaacgaa 8357
Query: 407 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8356 gatctacaaacagctgaatctaaaaagactgataagactgagccttccaagccctctgaa 8297
Query: 467 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8296 gagataaatctagagggtgttgcgaaacctgatcctaaaccatcatctacacctaaaaaa 8237
Query: 527 aggataacataatcaagatgagcttaagctggtgataaaccattctctcacctgagcaac 586
|||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8236 aggaaaacaaaatcaagaagagcttaagctggtgataaaccattctctcacctgagcaac 8177
Query: 587 tttctgattagactacattggacagnntagt-aaatcatttttatacgcaat-accactg 644
||||||||||||||||||||||||| ||| |||||||||||| ||||||| |||||||
Sbjct: 8176 tttctgattagactacattggacagta-agtaaaatcatttttaaacgcaataaccactg 8118
Query: 645 catagactttgtacatttgggaaccatattaaatttatttgcaatacaaa-gttgcagaa 703
||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||
Sbjct: 8117 catagacttgtaacatttgggaaccatataaaatttaattcaaatacaaaggttgcagaa 8058
Query: 704 gccattattttgtcagattactacgatcta-tatattcaacgttgtgtaaagccacatcc 762
|||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 8057 gccattatttcgtcagattactacgatctattatatacaacgttgtgtaaaggcacatcc 7998
Query: 763 taaatagctgcctttcgttttnctttttcacntcttcgtt 802
|||||||||||||| || ||| ||||||||| ||||||||
Sbjct: 7997 taaatagctgccttccg-tttcctttttcac-tcttcgtt 7960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,478
Number of Sequences: 1807
Number of extensions: 13478
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)