BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE01FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1138 0.0
>3x_Contig1688
Length = 18058
Score = 1138 bits (574), Expect = 0.0
Identities = 623/633 (98%), Gaps = 5/633 (0%)
Strand = Plus / Minus
Query: 86 tgacacatcttcgacctcaatgaaattactgacaagatatcttgaaggaatatcaaaata 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4120 tgacacatcttcgacctcaatgaaattactgacaagatatcttgaaggaatatcaaaata 4061
Query: 146 ctgggttatggaagatcgaagtcaagttctgactgccgactgcaatgacatttttgattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4060 ctgggttatggaagatcgaagtcaagttctgactgccgactgcaatgacatttttgattg 4001
Query: 206 gattgtgacacaatatgacgaatcatcgttcagcggtgtggaagctttatatgagctcgc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4000 gattgtgacacaatatgacgaatcatcgttcagcggtgtggaagctttatatgagctcgc 3941
Query: 266 tcgttttatgactcttttattggaaaagtacaacctctccaatagttccatatctggagg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3940 tcgttttatgactcttttattggaaaagtacaacctctccaatagttccatatctggagg 3881
Query: 326 caaacaaagagtgttcaagatactcagtggttgcattactaggttgccgaaatacttgac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3880 caaacaaagagtgttcaagatactcagtggttgcattactaggttgccgaaatacttgac 3821
Query: 386 gaacagggtagtatctctgctcggaacctatgtcaaaagggttggtgttactaatcaacg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3820 gaacagggtagtatctctgctcggaacctatgtcaaaagggttggtgttactaatcaacg 3761
Query: 446 tatattattcaaagaactacttcagagattcaatcctcctcaagagtcggttgaaactgc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3760 tatattattcaaagaactacttcagagattcaatcctcctcaagagtcggttgaaactgc 3701
Query: 506 tgcatttttttcgttgacatgtacgaaattatcccttatcaatgagttttatttgctcaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3700 tgcatttttttcgttgacatgtacgaaattatcccttatcaatgagttttatttgctcaa 3641
Query: 566 ctctatcttacatctgttagataacacaaacttctctcatcttctcttatatgntgaaaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 3640 ctctatcttacatctgttagataacacaaacttctctcatcttctcttatatgttg-aaa 3582
Query: 626 aaagtttggatacgatctccactttttatgggcttttgttctaaacaagatcttctttca 685
||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |||||||
Sbjct: 3581 aaagtttggatacgatctcaactttttat-ggcctttgttctaaacaagatc-tctttca 3524
Query: 686 tcaattgcagattttttatttttagaccagtgg 718
|||| ||||||| ||||| || |||||||||||
Sbjct: 3523 tcaa-tgcagatatttta-ttatagaccagtgg 3493
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,536
Number of Sequences: 1807
Number of extensions: 15536
Number of successful extensions: 291
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)