BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE01RM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1226 930 0.0
3x_Contig755 220 4e-57
>3x_Contig1226
Length = 5066
Score = 930 bits (469), Expect = 0.0
Identities = 563/583 (96%), Gaps = 9/583 (1%)
Strand = Plus / Plus
Query: 231 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 60
Query: 291 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 120
Query: 351 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 180
Query: 411 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 240
Query: 471 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 300
Query: 531 gaatgtagatattgttattgaagttatcggatttatccatcatttcgacagttntcattg 590
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 gaatgtagatattgttattgaagttatcggatttatccatcatttcgacagttttcattg 360
Query: 591 gatcaagaccatatnccagactcgcgcgtttacgcattat-aaacttatatcatttctgt 649
|||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 361 gatcaagaccatatcccagactcgcgcgtttacgcattataaaacttatatca-ttctgt 419
Query: 650 -acagcttctctgccctcgatgtaaaactcttttacgtcttcagaatcacctcagtaatc 708
|||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 420 aacagcttctctg-cctcgatgtaaaactctttaacgtcttcagaatcactcaagtaatc 478
Query: 709 ggcgtcatcttccatacttccggatgatttttttttcattcagagttaatatccttcaag 768
| ||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct: 479 gccgtcatcttccatacttccggatga-ttttttttcatccagagttaatat-cttcaag 536
Query: 769 tcatttctcggtattcagggtcttcgaaaggacaagtttttta 811
|||| || | |||| || ||||||||||| |||||||||||||
Sbjct: 537 tcatctc-ctgtatcca-ggtcttcgaaa-gacaagtttttta 576
>3x_Contig755
Length = 2473
Score = 220 bits (111), Expect = 4e-57
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 49 ataacctgcaatggccgcagcaatgagtctaagacgttctttatttgcagatcccaaaat 108
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 2304 ataacctgcaatggccgcagcaatgagtctaagacgttcattatttgcacatcccaaaat 2363
Query: 109 agatatagctttctgaacgtcaccgaagaagacagcccaggcagcagctttctcatagtg 168
| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 acatatagcattcacaaagtcaccgaagaagacagcccaggcagcagctttctcatagtg 2423
Query: 169 attttgagctattagtgatttatattt 195
||||| |||||||||||||||| ||||
Sbjct: 2424 attttcagctattagtgatttacattt 2450
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6622
Number of Sequences: 1807
Number of extensions: 6622
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)