BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE02FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig952 1291 0.0
>3x_Contig952
Length = 3817
Score = 1291 bits (651), Expect = 0.0
Identities = 691/701 (98%), Gaps = 3/701 (0%)
Strand = Plus / Minus
Query: 87 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1325 tataactccagtggatgaaaatcctcatcttcacaacaaagctttaaaaacttgatactg 1266
Query: 147 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1265 ctattctgaatttgattcgactgccaatgcggtaatctggccgacgaagtgtattcttga 1206
Query: 207 ctcgttttttccctcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1205 ctcgttttttccctcgttaaagtttggatgtactggattttgtactgctgaaaagattgt 1146
Query: 267 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 acctttactgttttaaactgtatgtccattgttgtcatctggcgcttcggaagatcataa 1086
Query: 327 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 gataaaaactcttcataaagttccgattctcgttgtaccaacctgctatgcattactgga 1026
Query: 387 aattcacaagagtgtctaagtgttctccctagcggttgtaaaaagtcctcatttaaccga 446
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1025 aattcacaagagtgtctaagtgttct-cctagcggttgtaaaaagtcctcatttaaccga 967
Query: 447 tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tatttagcatgtacattttgatcgaatttattcaacctaacagaaaggtccaactttgtt 907
Query: 507 aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aaggcagcactgaacaaatctttcacattatctctaactataatcttttctttgtatagt 847
Query: 567 gatcttgtatctacattctgattgctgntatatggtgccttgcatttccattcccnatta 626
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 846 gatcttgtatctacattctgattgctgttatatggtgccttgcatttccattccggatta 787
Query: 627 tttcagggccggatgtatcctttgactaaaattgcagtggtatcgaattcaatgatatat 686
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 ttccagggccggatgtatcctttgactaaaattgcagtggtatcgaattcaatgatatat 727
Query: 687 ttcaccaaagatgatccattntgattcctt-ttgccgactttgtgaaactttaaatcaat 745
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 726 ttcaccaaagatgatccatt-tgattccttcttgccgactttgtgaaactttaaatcaat 668
Query: 746 ataactccgagtagccaatttcaagtacctttttttcggcc 786
|| ||||||||||||||||||||||||||| ||| ||||||
Sbjct: 667 atcactccgagtagccaatttcaagtacctctttgtcggcc 627
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6767
Number of Sequences: 1807
Number of extensions: 6767
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)