BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1738 1471 0.0
>3x_Contig1738
Length = 21411
Score = 1471 bits (742), Expect = 0.0
Identities = 859/887 (96%), Gaps = 9/887 (1%)
Strand = Plus / Plus
Query: 47 gagagacgaagcctttagtatctggatagaatggagcaagcttttcc-aaaaaacacacc 105
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16945 gagagacgaagcctttagtatctggatagaatggagcaagcttttcccaaaaaacacacc 17004
Query: 106 agaaaatacgtttttgaggaaaatgcatagagattattacctagtttctattgtacacca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17005 agaaaatacgtttttgaggaaaatgcatagagattattacctagtttctattgtacacca 17064
Query: 166 tgatttcatcaaccctgacggattgtgggacttgctactgagttagcaatgtgtcctacg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17065 tgatttcatcaaccctgacggattgtgggacttgctactgagttagcaatgtgtcctacg 17124
Query: 226 aattacgtttcccattggcattcaaagtaggattttgtgaatctagttcattctgtaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17125 aattacgtttcccattggcattcaaagtaggattttgtgaatctagttcattctgtaaat 17184
Query: 286 actcagtgactttctgtagtttaccgtcgttccattgctgtataagtccatacatcagtt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17185 actcagtgactttctgtagtttaccgtcgttccattgctgtataagtccatacatcagtt 17244
Query: 346 taaccgtactattattgaaagtaaacatgcccctattgaacttatcgccaggaaggatga 405
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 17245 taaccgtactattattgaaagtaaacatgcccctattgaacttagcgccaggaaggatga 17304
Query: 406 tcaatttggaacccaagaaacaggtcttaagagctggaattggatccaggttgattgcat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17305 tcaatttggaacccaagaaacaggtcttaagagctggaattggatccaggttgattgcat 17364
Query: 466 aaaatagattccccttcttatcttgtaagataagtttatatacatgttgattgagatttc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17365 aaaatagattccccttcttatcttgtaagataagtttatatacatgttgattgagatttc 17424
Query: 526 cagcatccttgttatttgtataattactatcaccattaccaactccagagttgttgtgat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17425 cagcatccttgttatttgtataattactatcaccattaccaactccagagttgttgtgat 17484
Query: 586 acgatgttgtaccatcgtcatcgtcatcatccaagttcacctncgaaatgagttgttgac 645
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 17485 acgatgttgtaccatcgtcatcgtcatcatccaagttcacctccgaaatgagttgttgac 17544
Query: 646 ggtcacgtgacgtacttagcctatccactttctgtcttcttgggtcaataaccactttgc 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17545 ggtcacgtgacgtacttagcctatccactttctgtcttcttgggtcaataaccacttgca 17604
Query: 706 attcgtncaactgcggtcacttggaccgcggaaatattctctatcatgcacacttgggga 765
|||||| || ||||| ||||||||||| ||||||||||||||||||||||||| || |
Sbjct: 17605 attcgtccacctgcgtcaacttggaccgc-gaaatattctctatcatgcacactt-ggaa 17662
Query: 766 taacaacgggtctgtttaccggtatgagccttccgttgaaatatatctttggtgggccat 825
||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 17663 taacaac-ggtctgtttaccgttatgag-cttccgttgaaatatatctttggtgggccat 17720
Query: 826 gttttcattgttgaaagccctcacgatcaacgaataagggtcttctaaaacattggtaaa 885
| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 17721 g-tttcattgttgaaagccttcacgatcaacgaattagggtcttctaaaacattggt-aa 17778
Query: 886 cagtcgtaatggtcacctttnttgagttcgggaagtcatattgcact 932
|||||||||| |||| | || |||| || |||||||||||||||||
Sbjct: 17779 cagtcgtaat-gtcaacctttctgaggtc-ggaagtcatattgcact 17823
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6430
Number of Sequences: 1807
Number of extensions: 6430
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)