BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE03FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1217 0.0
>3x_Contig1694
Length = 18020
Score = 1217 bits (614), Expect = 0.0
Identities = 670/685 (97%), Gaps = 3/685 (0%)
Strand = Plus / Plus
Query: 87 cgaattgcaacagccgacacccaagaaaaagtgcagggaaatttatcctgagggaaaaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6129 cgaattgcaacagccgacacccaagaaaaagtgcagggaaatttatcctgagggaaaaat 6188
Query: 147 cgcaaatagaatgaatgttcccaaaccagatcctatggaattctgacaaaaagataaaag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6189 cgcaaatagaatgaatgttcccaaaccagatcctatggaattctgacaaaaagataaaag 6248
Query: 207 ggggtttctgtcatacacgtgacctatttttgttgtttcattcccagacggcctcagttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6249 ggggtttctgtcatacacgtgacctatttttgttgtttcattcccagacggcctcagttc 6308
Query: 267 gaaccctgaaggtacaacttcccctcttttttttttttttttttttttatatcgaacctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6309 gaaccctgaaggtacaacttcccctcttttttttttttttttttttttatatcgaacctg 6368
Query: 327 ctttctgcttgttgttcgaaatcgatggaatttgggcatccatcaaggattgtctgcact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6369 ctttctgcttgttgttcgaaatcgatggaatttgggcatccatcaaggattgtctgcact 6428
Query: 387 tctagagatcgaaactttttgacagcttgttctttattgaattagggtattgtacgaaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6429 tctagagatcgaaactttttgacagcttgttctttattgaattagggtattgtacgaaac 6488
Query: 447 aggcaagtattcatcgtaatatcgcataccttacaccgcgccaacgtttgctgcaagtta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6489 aggcaagtattcatcgtaatatcgcataccttacaccgcgccaacgtttgctgcaagtta 6548
Query: 507 caacttgatagcatttggtatataactcaataagttttatcgaagtttgataaatcttac 566
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6549 caacttgatagcatttggtatataactcaataagttttatcgaggtttgataaatcttac 6608
Query: 567 tgagagaagaagtgaagctcagtcgattcgctggttaacggattacgtcgaggctcatat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6609 tgagagaagaagtgaagctcagtcgattcgctggttaacggattacgtcgaggctcatat 6668
Query: 627 acagaggactatatggatcanaaatgtctggatggtatacttggatatctctcaatcctt 686
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |||
Sbjct: 6669 acagaggactatatggatcaaaaatgtctgtatggtatacttggatatctctcagt-ctt 6727
Query: 687 cttattttccatgggtttgagcagtattgacaaagtgcatggttcataccttgatcccat 746
||||| |||||| ||||||||||||||||||||||||||||| ||| || ||||||| |
Sbjct: 6728 cttatattccat-ggtttgagcagtattgacaaagtgcatggctcagacgttgatccga- 6785
Query: 747 tttgcgatctatcccatgtttcgaa 771
||||||||||| || ||||| ||||
Sbjct: 6786 tttgcgatctagccaatgttacgaa 6810
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,062
Number of Sequences: 1807
Number of extensions: 28062
Number of successful extensions: 4752
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)