BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE03RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 975 0.0
>3x_Contig1742
Length = 17167
Score = 975 bits (492), Expect = 0.0
Identities = 596/626 (95%), Gaps = 5/626 (0%)
Strand = Plus / Minus
Query: 267 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 7732
Query: 327 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 7672
Query: 387 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 7612
Query: 447 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 7552
Query: 507 gatataaagtttcggtaattttgatagttccctttatatcaatgcagcctcttgcaccga 566
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7551 gaaataaagtttcggtaattttgatagttcccttataatcaatgcagcctcttgcaccga 7492
Query: 567 ttgaatgtttgntgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 626
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7491 ttgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaag 7432
Query: 627 ctctttgatatttggttttgtcaaatttttcgagtcattaaatgccaaatcaacaccgat 686
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7431 ctctttgataattggttttgtcaaattttcgaagtcattaaatgccaaatcaacaccgat 7372
Query: 687 gatatcattttcagacatccatctaaatagattttctaactggcctggagaagctttctg 746
||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||
Sbjct: 7371 gatatcattttcagacatccatctaaatagaatttctaactgttctgaggaagctatctg 7312
Query: 747 agattgagcgagacccaacttacgtttccttgaaaattcgttcttagttgaggaaaacgc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7311 agattgagcgagacccaacttacgtttccttgaaaattcgttcttagttgaggaaaacgc 7252
Query: 807 gtttattattttttcg-aagtgggtcagtttttggc--aagaaac-cccttgaagagtag 862
|||||| || |||||| ||||| | |||| ||||| ||||||| || |||| ||||||
Sbjct: 7251 gtttatcatattttcgaaagtgtgcaagttattggcaaaagaaacaccattgaggagtag 7192
Query: 863 cttttctag-ggtttaccttgcctct 887
|| |||||| ||||||||||| ||||
Sbjct: 7191 ctcttctagtggtttaccttgtctct 7166
Score = 379 bits (191), Expect = e-105
Identities = 205/207 (99%), Gaps = 2/207 (0%)
Strand = Plus / Minus
Query: 48 agcagagtcattgagtcttatctaaaatat-accggctgtttcactgattagttcaccat 106
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8010 agcagagtcattgag-cttatctaaaatattaccggctgtttcactgattagttcaccat 7952
Query: 107 cgaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7951 cgaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgact 7892
Query: 167 tctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7891 tctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttct 7832
Query: 227 cgtagttgaagtccaagttaatcaact 253
|||||||||||||||||||||||||||
Sbjct: 7831 cgtagttgaagtccaagttaatcaact 7805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7190
Number of Sequences: 1807
Number of extensions: 7190
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)