BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE04FM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 1225 0.0
>3x_Contig1490
Length = 9411
Score = 1225 bits (618), Expect = 0.0
Identities = 648/657 (98%), Gaps = 1/657 (0%)
Strand = Plus / Plus
Query: 93 aggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaatttgcggata 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3520 aggccattcacaaaattgttgatatcagaatcaaagacttggagaagcaatttgcggata 3579
Query: 153 atgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgaccaagaatg 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3580 atgataagaattacaagatcaacgtttcaccaccagctcgggatttcttgaccaagaatg 3639
Query: 213 gttactcggaggatatgggtgctaggccattgaacagattaattcaaaccgagattttga 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3640 gttactcggaggatatgggtgctaggccattgaacagattaattcaaaccgagattttga 3699
Query: 273 acccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtcaatgtag 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3700 acccaatggcaatccatatcttgaagggtgagatcaaagacaaagaaattgtcaatgtag 3759
Query: 333 aagtgggtgccgatggatctcatttagaagttttaccaaatcacccagcttcatcagaaa 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3760 aagtgggtgccgatggatctcatttagaagttttaccaaatcacccagcttcatcagaaa 3819
Query: 393 ttggtgatgaagacatggatttggacttggacgacgatgacgacttagacctagactgat 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3820 ttggtgatgaagacatggatttggacttggacgacgatgacgacttagacctagactgat 3879
Query: 453 ctaaaatgaattacaaaaagaaaacatacaaacaaactcactcagtaataaaatttcagt 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3880 ctaaaatgaattacaaaaagaaaacatacaaacaaactcactcagtaataaaatttcagt 3939
Query: 513 tcaacagtaccatcatatatagtgtaaagtacatatttttttcactttctttagtataat 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3940 tcaacagtaccatcatatatagtgtaaagtacatatttttttcactttctttagtataat 3999
Query: 573 attttgacttttacatgttttcatgttcattagaagtgcanaccaatggtgctgctgtta 632
|||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 4000 attttgacttttacatgttttcatgttcataagaggtgcaaaccaatggtgctgctgtta 4059
Query: 633 ttcatacaagcgtactaactaagcattctggctgagtttgtaattacatgttacctagat 692
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 4060 ttcatacaagcgtactaactaagcattctggctgagtttgt-attacatgttacttagat 4118
Query: 693 gggccaggttctttcaacctttttcactgatttccccagtcagtaagtccaattttg 749
|||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4119 gggcagggttctttcagcctttttcactgatttcccaagtcagtaagtccaattttg 4175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8108
Number of Sequences: 1807
Number of extensions: 8108
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)