BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE05RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig342 1653 0.0
>3x_Contig342
Length = 2225
Score = 1653 bits (834), Expect = 0.0
Identities = 870/881 (98%), Gaps = 1/881 (0%)
Strand = Plus / Plus
Query: 48 taacaagacccggttaccttgattgaatcacaatggaatatggacacgagctggatataa 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 taacaagacccggttacctcgattgaatcacaatggaatatggacacgagctggatataa 1118
Query: 108 atgctctgcttaacctaaaacaatgtgtttaagatgggaatacccagacaataagactga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 atgctctgcttaacctaaaacaatgtgtttaagatgggaatacccagacaataagactga 1178
Query: 168 ttgataccttagaaaaaaagtggcaattactaataatacaggtcaataaaactcttccgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 ttgataccttagaaaaaaagtggcaattactaataatacaggtcaataaaactcttccgt 1238
Query: 228 agtttacttgcctctcgctcaacagaccagaaatgccgcgcgtacttgaacagtgattaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 agtttacttgcctctcgctcaacagaccagaaatgccgcgcgtacttgaacagtgattaa 1298
Query: 288 tactctcacacgccttaaggtaccagtgtaaaactatcactttggtgttttgtcagggta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 tactctcacacgccttaaggtaccagtgtaaaactatcactttggtgttttgtcagggta 1358
Query: 348 aacaaaacaaaacattctaattcaaaagtatcagaatctctaacttttcaaagcttcgtt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 aacaaaacaaaacattctaattcaaaagtatcagaatctctaacttttcaaagcttcgtt 1418
Query: 408 gggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcgatca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 gggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcgatca 1478
Query: 468 tattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccacactat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 tattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccacactat 1538
Query: 528 cacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatcacct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatcacct 1598
Query: 588 attctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttatacaggatgc 647
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 1599 attctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttaaacaggaggc 1658
Query: 648 gggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagatgttt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 gggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagatgttt 1718
Query: 708 tcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtagcgtt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtagcgtt 1778
Query: 768 attttcgctagacaatcaagtgattcggccatgatattcaagttnttatctgtctttgta 827
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1779 atttccgctagacaatcaagtgattcggccatgatattcaagtttttatctgtctttgta 1838
Query: 828 gatagtctgtctgtcagtgatgatgatatagattctattgcctttgtattgaa-aatttt 886
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1839 gatagtctgtctgtcagtgatgatgatatagattctattgcctttgtattgaagaatttc 1898
Query: 887 cagaaatcggacaattgacgttcgcaatgttctgcatactg 927
||| ||||||||||||||||||||||||| |||||||||
Sbjct: 1899 aagacatcggacaattgacgttcgcaatgtcttgcatactg 1939
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6574
Number of Sequences: 1807
Number of extensions: 6574
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)