BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE06RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1348 0.0
>3x_Contig1062
Length = 5564
Score = 1348 bits (680), Expect = 0.0
Identities = 846/888 (95%), Gaps = 13/888 (1%)
Strand = Plus / Plus
Query: 46 cttcgtatacagaagctgatgcgtcggcaaagtagaagtgacagcgccgaagacaacagc 105
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1068 cttcgtatacagaagctgatgcgacggcaaag-agaagtgacagcgccgaagacaacagc 1126
Query: 106 aactcagtcttcataaccctaaaccctgtataatgaactaatttccgttcgtgtaatttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 aactcagtcttcataaccctaaaccctgtataatgaactaatttccgttcgtgtaatttc 1186
Query: 166 tcttattccaaattaaaaactaaagtccagttgaacaactatgagtaaacttatttccaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1187 tcttattccaaattaaaaactaaagtccagttgaacaactatgagtaaacttagttccaa 1246
Query: 226 ttttccttgtatgcgtttcttgagctcttaattctctctctgctattgctttcagatgaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 ttttccttgtatgcgtttcttgagctcttaattctctctctgctattgctttcagatgaa 1306
Query: 286 ggctgtcaaggagtgaatgaatggatcaatgaacaacgtagcgatcggacagttagtgct 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1307 ggctgtcaaggagtgaatgaatggatcaatgaacaacgtagcgatcggacagttagtgct 1366
Query: 346 gctccttctatctcaaaagttaatggatagtataacgtaaaagcgttactggattgcaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1367 gctccttctatctcaaaagttaatggatagtataacgtaaaagcgttactggattgcaga 1426
Query: 406 accgttaag-atgaggaagaaacgaatgggccctgagaatacatcttgttttatttaagg 464
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1427 accgttaagcatgaggaagaaacgaatgggccctgagaatacatcttgttttatttaagg 1486
Query: 465 cgggagccctcatctcgtgaaatatatgaatattaattgaaagacaccaaaaatatcaca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 cgggagccctcatctcgtgaaatatatgaatattaattgaaagacaccaaaaatatcaca 1546
Query: 525 gttgcaagacaggaaaaaccattattatattttggtattacttctcagtaaactaacggg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 gttgcaagacaggaaaaaccattattatattttggtattacttctcagtaaactaacggg 1606
Query: 585 ccagttggatacaatcgaaatcctctacaaccctgtcttagctnntntcatctcacattc 644
||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 1607 ccagttggaaacaatcgaaatcctctacaaccctgtcttagcttttttcatctcacattc 1666
Query: 645 tacttctggtcccccaaattctcacctacctcaaatttctgaagattcacttataatnct 704
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1667 tacttctggtcccccaaattctcacctacctcaaagttctgaagattcacttataattct 1726
Query: 705 tcttttggcatcctt-aaacatttcgcgaattctnctaatgtggtaccaaaataggatat 763
||||||||||||||| ||||||||||||| |||| |||||| ||||||||||||||||
Sbjct: 1727 tcttttggcatccttaaaacatttcgcgatttctctaaatgtgttaccaaaataggatat 1786
Query: 764 -acgcgaatcacgggtnaaacagtagcattcacc-anaaggtttaaaaaaaacagattca 821
|| |||| ||||| || ||||||||| |||| | ||| | |||||||||||||| ||
Sbjct: 1787 aacacgaacaccgggtaaaccagtagcatccaccaaaaagatataaaaaaaacagataca 1846
Query: 822 atttcttgt-acgtgaaggggttgttttgactattattcaaggtcacctgtggttaccta 880
| ||||||| ||||| |||||||| |||||||||||||||||||||| ||| ||||| ||
Sbjct: 1847 aattcttgtcacgtg-aggggttg-tttgactattattcaaggtcacgtgt-gttacgta 1903
Query: 881 ttaacgggacttcccc-tttttgtaaagttaaggtcaatggaattttg 927
||||| ||||||||| ||||||||| || |||||||||||||||||
Sbjct: 1904 -taacgtgacttccccttttttgtaatgt--aggtcaatggaattttg 1948
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6662
Number of Sequences: 1807
Number of extensions: 6662
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)