BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE08FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1233 0.0
>3x_Contig1731
Length = 24233
Score = 1233 bits (622), Expect = 0.0
Identities = 681/697 (97%), Gaps = 3/697 (0%)
Strand = Plus / Plus
Query: 87 tacattggtaacgaagagtttggcatatttaacgtggattcgataacagctgatactctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15513 tacattggtaacgaagagtttggcatatttaacgtggattcgataacagctgatactctt 15572
Query: 147 gttggtgcctctggctgatcctactcttggtattttctttctctgcttctcaaaagacaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15573 gttggtgcctctggctgatcctactcttggtattttctttctctgcttctcaaaagacaa 15632
Query: 207 gctcatcatataactcataagctcatcgcatcttttcaattatttgtctaatgtggattc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15633 gctcatcatataactcataagctcatcgcatcttttcaattatttgtctaatgtggattc 15692
Query: 267 ttttttttcaccgtatgtagaattgtagttttggaaaattttatggttgaaacctgtgca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15693 ttttttttcaccgtatgtagaattgtagttttggaaaattttatggttgaaacctgtgca 15752
Query: 327 ggacgaggatttgaaaagaaacgatggtcatctctatcgtgagaagtgacatataagggc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15753 ggacgaggatttgaaaagaaacgatggtcatctctatcgtgagaagtgacatataagggc 15812
Query: 387 atctaatgaaaaatttggaaccgatgaaaaattaaagtattaagaattaagaaagctggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15813 atctaatgaaaaatttggaaccgatgaaaaattaaagtattaagaattaagaaagctggt 15872
Query: 447 tgaatatgatgatttgtgatgcaaattatatgagttttcaaaaggtcgagcaggttttga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15873 tgaatatgatgatttgtgatgcaaattatatgagttttcaaaaggtcgagcaggttttga 15932
Query: 507 tccacttattgtgatagtttataaatctcggagggtttattccangtttccaggtttcta 566
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 15933 tccacttattgtgatagtttataaatctcggagggtttattccaggtttccaggtttcta 15992
Query: 567 agttttttttcgtttcgatatacttttaaagagagatgattgtttcagttagatgttttt 626
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 15993 ggttttttttcgtttcgatatacttttaaagagagatgattgttccagttagatgttttt 16052
Query: 627 cctgtgggaaagttgtcggtgacaaatgggaagcctatttgaatttgttgcaagaagaag 686
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 16053 cctgtgggaaagttgtcggtgacaaatgggaagcctatttgaatatgttgcaagaagaag 16112
Query: 687 aacttgaagaagggccttgctttgactagattggggtttaaaaagatactgttgcaaaat 746
|||| |||||||| | ||||||||||||||||||| || || ||||||||||||| ||
Sbjct: 16113 aactagaagaaggtac-tgctttgactagattgggg-ttgaagagatactgttgcagaag 16170
Query: 747 attgattctaacccattgtcgatttgattgaaaagtt 783
| |||||||||| || |||||||||||||||||||||
Sbjct: 16171 aatgattctaacaca-tgtcgatttgattgaaaagtt 16206
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,977
Number of Sequences: 1807
Number of extensions: 14977
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)