BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE08RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1124 0.0
>3x_Contig1338
Length = 8134
Score = 1124 bits (567), Expect = 0.0
Identities = 692/727 (95%), Gaps = 6/727 (0%)
Strand = Plus / Plus
Query: 44 gcttaccccaggtttaaagaccttctctactttttctacaaatataggtaactttaagac 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6127 gcttaccccaggtttaaagaccttctctactttttctacaaatataggtaactttaagac 6186
Query: 104 aatgactttagactgtcgacgagtactttccatcagggtctattcctcgtgatattttac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6187 aatgactttagactgtcgacgagtactttccatcagggtctattcctcgtgatattttac 6246
Query: 164 ggtctctcgtctctgtttcgaaatttgcaagccaacttgcatgcagtctttcattgtact 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 6247 ggtctctcgtctctgtttcgaaatttgcaagccaacttgcatgcagtctttcaatg-act 6305
Query: 224 ctttgaattgactgttacaattcataggcaataacaagggtcctaagatgacttccgaag 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6306 ctttgaattgactgttacaattcataggcaataacaagggtcctaagatgacttccgaag 6365
Query: 284 ggttcactgccaacttacactagtaatacttcttcagctatgctttagcagcaaagtcca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6366 ggttcactgccaacttacactagtaatacttcttcagctatgctttagcagcaaagtcca 6425
Query: 344 tacatattgtgcatggaatcggtaagaaatataacgatatataaacagtgaacaaatacc 403
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 6426 tacatattgtgcatggaatcggtaagaaata-aacgatatataaacagtgaacaaatacc 6484
Query: 404 gtggatttctgtcattgaatcaggatcatcttgctctcaatcatggttgtggttgaagcg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6485 gtggatttctgtcattgaatcaggatcatcttgctctcaatcatggttgtggttgaagcg 6544
Query: 464 tgaattttgttacagcattagatcttacanaccagcaaaccaacattataaaagtttggg 523
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6545 tgaattttgttacagcattagatcttacaaaccagcaaaccaacattataaaagtttggc 6604
Query: 524 catggcagattccgacatacgcatgcccgaagttgatgtgaaaaagttttcgatatcaag 583
|||||||||||||||| ||||| | |||||||||||||||||| | |||||||||||||
Sbjct: 6605 aatggcagattccgacaaacgcagggccgaagttgatgtgaaaagggtttcgatatcaag 6664
Query: 584 ttntgatgtcgaaatccgttctcaagattccttaacttctgantatcctttcaatgatcc 643
|| ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||
Sbjct: 6665 ttttgatgtcgaaatccgttctcaagattccttaacttctgataatcccttcagtgatcc 6724
Query: 644 aaaaatcg-aggatactatcgtgcattatacgatgaacagtaagt-ccatagtttaaatg 701
|||||||| || ||||||||||||||||||||||| ||||||||| | | ||| || ||
Sbjct: 6725 aaaaatcgcagaatactatcgtgcattatacgatg-acagtaagtacgagagtagaagtg 6783
Query: 702 cgtttgatccanaatttccctgggccaaagaaggaagaaccaaaagccgttcggaaattg 761
||||||||||| | ||| | || ||||| ||||||||| ||||| |||||||||||||
Sbjct: 6784 cgtttgatccag-agttcacatggacaaaggaggaagaacaaaaagtcgttcggaaattg 6842
Query: 762 aacatca 768
|||||||
Sbjct: 6843 aacatca 6849
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6427
Number of Sequences: 1807
Number of extensions: 6427
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)