BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE09FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1195 0.0
>3x_Contig675
Length = 2979
Score = 1195 bits (603), Expect = 0.0
Identities = 663/679 (97%), Gaps = 3/679 (0%)
Strand = Plus / Minus
Query: 87 caacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1668 caacaatgtattaaggttagcctttgtagtatttcgggcttcagcaaacgcttttttcat 1609
Query: 147 cagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 cagaaatgaatcaggatccatcatcataggtaaatgtttagccatgtagaaaatcacatc 1549
Query: 207 aataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1548 aataccttttctttttcgaggaaaatgcagtcgtttctttttaatcaagatcagagttgt 1489
Query: 267 tccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 tccgggcggagaaacttgccaaggtgacgtacgtacctcaatatttctttcggagaaaca 1429
Query: 327 acaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaata 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1428 acaagatcagaatgatcacgtgaccaattgaccaaaagatgtggctcattcataggaata 1369
Query: 387 aaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1368 aaaaccgtacgctctacactgtacactaccacgcgtcttcgctcactccatggtatacaa 1309
Query: 447 gggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 gggtgttgctgtcataccgtctcggctgttatgcgaaggtaacgaaatattttttttttt 1249
Query: 507 tctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 tctttcgaaaaaaacgtcgactcaagccatcatcacaaactcgtcccagaagcaacgtac 1189
Query: 567 gactcgcatatttgctgaatctggcaaatcgcataccgtattatcattagaattatgccc 626
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 1188 gactcgcatatttgctgaatctggcaaatcgcataccgtaatatcattagaatta-gccc 1130
Query: 627 caaggcatttcttaagccctcgagggaaaaaaaaaagat-ggaacgaacattcacaccca 685
||||||| ||||||||| ||||||||||||||||||||| | ||||||||||||||| ||
Sbjct: 1129 caaggcaattcttaagcactcgagggaaaaaaaaaagatagaaacgaacattcacacaca 1070
Query: 686 gaaacttacagctgggagaatgaaaggaaaccgtggaaaaaaag-aaaagccatgattga 744
|||||||||||||| ||||| |||||||||| || ||||||||| |||||| ||||| |
Sbjct: 1069 gaaacttacagctgagagaaagaaaggaaacagtagaaaaaaagaaaaagcaatgatgaa 1010
Query: 745 gttagcctgattaacatgg 763
|| ||||||||||||||||
Sbjct: 1009 gtaagcctgattaacatgg 991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,083
Number of Sequences: 1807
Number of extensions: 20083
Number of successful extensions: 264
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)