BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE09RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1300 0.0
>3x_Contig1541
Length = 10565
Score = 1300 bits (656), Expect = 0.0
Identities = 718/735 (97%), Gaps = 3/735 (0%)
Strand = Plus / Plus
Query: 47 gcttaaacgtaaaaaggagctggttaatcgtactttagctcaaaaacagaaggaaaagga 106
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4751 gcttaaacgtaaaaaggagctggagaatcgtactttagctcaaaaacagaaggaaaagga 4810
Query: 107 actccaagagtttttggatctggcagtacaaataagaaacataacgctagttgataccaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4811 actccaagagtttttggatctggcagtacaaataagaaacataacgctagttgataccaa 4870
Query: 167 acaaccagcaggtcttttgaaagatactaaactcacattggaaaacccaacagatttttt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4871 acaaccagcaggtcttttgaaagatactaaactcacattggaaaacccaacagatttcga 4930
Query: 227 ttcacaattaatatttccagctatggttctttatccgactacggacgagtttgactttat 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931 atcacaattaatatttccagctatggttctttatccgactacggacgagtttgactttat 4990
Query: 287 cgcgtctgtttctgaactatccacaccaaatgaccttcttgatgttgtacttaacagacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 cgcgtctgtttctgaactatccacaccaaatgaccttcttgatgttgtacttaacagacc 5050
Query: 347 ggcagaatggtttgcacaaccagggcacaaagatttttactgcatctaaacttcatgcat 406
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5051 ggcagaatggtttgcacaaccagggcacaaagatttt-actgcatctaaacttcatgcat 5109
Query: 407 acatggaaactctgtctggaggcttgatcaagattggtaaaaaagttaccttccatgatg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5110 acatggaaactctgtctggaggcttgatcaagattggtaaaaaagttaccttccatgatg 5169
Query: 467 ttttgaagatggagaagcctaaggctcctcttttcgataagtctctaagagtatactttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5170 ttttgaagatggagaagcctaaggctcctcttttcgataagtctctaagagtatactttg 5229
Query: 527 taccaaaaacggaggcacaaggatggctagataactgggataagattgcagcantaatga 586
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 5230 taccaaaaacggaggcacaaggatggctagataactgggataagaatgcagcaataatga 5289
Query: 587 tacgattgtagatattacagacactagatattgcattatatagacacgtcactatgaatt 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5290 aacgattgtagatattacagacactagatattgcattatatagacacgtcactatgaatt 5349
Query: 647 aaggt-atttaccttttctt-agtttttgtagtcttgaagtgctagtttgaaagatctca 704
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5350 aaggtaatttaccttttcttaagtttttgtagtcttgaagtgctagtttgaaagatctca 5409
Query: 705 tcgatatgtagcggtggaatgggggcctatatttgctctatatccaaattttgttgcaac 764
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct: 5410 tcgatatgtagcggtggaatggggcctaatatttgctctatatcccaattttgttgcaac 5469
Query: 765 aacaatggttgcttt 779
|||||| ||||||||
Sbjct: 5470 aacaattgttgcttt 5484
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6797
Number of Sequences: 1807
Number of extensions: 6797
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)