BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE10FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1230 299 5e-81
>3x_Contig1230
Length = 5522
Score = 299 bits (151), Expect = 5e-81
Identities = 267/299 (89%), Gaps = 5/299 (1%)
Strand = Plus / Minus
Query: 367 gctactggggccctgttccagacatgcggtaagctctacagaagaaacttcagaccaata 426
||||||||||||||||||||||||||||||||| | || |||||||| || ||| ||||
Sbjct: 5220 gctactggggccctgttccagacatgcggtaagatataaagaagaaaattaagaaaaata 5161
Query: 427 ttcttagccaaagacggtaaaactccattgagatcgaaaataatctacgatgtaatctcc 486
|| |||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct: 5160 ttattagaaaaagaaggtaaaactccattgagatagaaaataatatacgatgtaatataa 5101
Query: 487 ttttatgtgactaaaatttcctttgggtatcttgttcaaccatttgtcattcttgacttt 546
||||||||||||||||||| ||||||||| ||||| || |||||| |||||||| |||
Sbjct: 5100 ttttatgtgactaaaatttaatttgggtatattgttaaaaaatttgtaattcttgaattt 5041
Query: 547 aagaaatcattat-tggatgggaaacggtcaatttttatatccatattgggatactaatt 605
||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct: 5040 aagaaatcattatatggatggaaaacggtcaatttttatatccatattggaatactaa-t 4982
Query: 606 aactttctttgcattcaaaggtccattccagtaaacaggtttaccaacctggttgaaga 664
|||||||||||||||||| |||||||| ||||||||| ||||||||| |||||||||||
Sbjct: 4981 aactttctttgcattcaagggtccatt-cagtaaaca-gtttaccaa-ctggttgaaga 4926
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6316
Number of Sequences: 1807
Number of extensions: 6316
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)