BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE10RM1.SCF screened BAC_end
(855 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1059 0.0
3x_Contig1802 349 6e-96
>3x_Contig1729
Length = 15481
Score = 1059 bits (534), Expect = 0.0
Identities = 619/636 (97%), Gaps = 9/636 (1%)
Strand = Plus / Minus
Query: 49 tgatgactaccgttcatttcatcactgctactcaaaagactgttgatggtccatcccaca 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 13995 tgatgactaccgttcattccatcactgctactcaaaagactgttgatggtccatcccaca 13936
Query: 109 aggactggagaggtggtagaactgcttccggtaacattatcccatcctctactggtgctg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13935 aggactggagaggtggtagaactgcttccggtaacattatcccatcctctactggtgctg 13876
Query: 169 ctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggctttca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13875 ctaaggctgtcggtaaagtcttgccagaattgcaaggtaaattgaccggtatggctttca 13816
Query: 229 gagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaaggaagcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13815 gagtcccaaccgtcgatgtttctgtcgttgatttgaccgtcaagttggctaaggaagcca 13756
Query: 289 cttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaatgttg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13755 cttacgatgaaatcaaggccgctgttaagaaggcttctcaaggtaagctaaagaatgttg 13696
Query: 349 ttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactccacca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13695 ttggttacactgaagactctgttgtttccagcgatttccttggtgacactcactccacca 13636
Query: 409 tctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgcttggt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13635 tctttgacgcctctgctggtattcaattgtctccaaagttcgtcaaggttgttgcttggt 13576
Query: 469 acgaatacgaatacngntactctgaaagagttgtcgatttggttgagcacgttgcttaaa 528
|||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13575 acgataacgaatacggttactctgaaagagttgtcgatttggttgagcacgttgcttaaa 13516
Query: 529 -tactctttt-agttaacgaacgc-tttgatgagactaac-at-tttcaagtgattcca- 582
||||||||| ||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 13515 ttactcttttaagttaacgaacgcttttgatgagactaacgatatttcaagtgattccat 13456
Query: 583 tttttacttctaa-tttttatcacctttat-tttaccattctatgccaggctttgcttta 640
||||||||||||| |||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct: 13455 tttttacttctaagtttttatcacctttatcttaaccattctatgccagtctttgcttta 13396
Query: 641 tggactttgattcaaa-tatgaaggggagtttttac 675
|||||||||||||||| ||||||||| |||||||||
Sbjct: 13395 tggactttgattcaaattatgaagggaagtttttac 13360
>3x_Contig1802
Length = 45229
Score = 349 bits (176), Expect = 6e-96
Identities = 224/240 (93%)
Strand = Plus / Minus
Query: 68 catcactgctactcaaaagactgttgatggtccatcccacaaggactggagaggtggtag 127
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15122 catcaccgctacccaaaagactgttgatggtccatcccaaaaggactggagaggtggtag 15063
Query: 128 aactgcttccggtaacattatcccatcctctactggtgctgctaaggctgtcggtaaagt 187
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct: 15062 aaccgcttccggtaacatcattccatcctctactggtgctgctaaggctgtcggtaaggt 15003
Query: 188 cttgccagaattgcaaggtaaattgaccggtatggctttcagagtcccaaccgtcgatgt 247
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 15002 cttgccagaattgcaaggtaagttgaccggtatggctttcagagtcccaaccgtcgatgt 14943
Query: 248 ttctgtcgttgatttgaccgtcaagttggctaaggaagccacttacgatgaaatcaaggc 307
|| || ||||| ||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct: 14942 ctccgttgttgacttgactgtcaagttggccaaggaagctacctacgatgaaatcaaggc 14883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5938
Number of Sequences: 1807
Number of extensions: 5938
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 2
length of query: 855
length of database: 10,358,551
effective HSP length: 16
effective length of query: 839
effective length of database: 10,329,639
effective search space: 8666567121
effective search space used: 8666567121
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)