BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE11RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1314 0.0
>3x_Contig1426
Length = 8319
Score = 1314 bits (663), Expect = 0.0
Identities = 722/739 (97%), Gaps = 2/739 (0%)
Strand = Plus / Plus
Query: 44 gcttccagcagatgtatatttgccatcaaattcatggatgattccttttttaaaaagtac 103
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 5943 gcttccagcagatgtatatttgccagcaaattcatggatgattccttttttaaaaagtac 6002
Query: 104 tccggatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6003 tccggatttgatcgcttctgagagaatccatcttagagacatatcacttaaaaaatgatt 6062
Query: 164 tttctcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggtattcc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 6063 tttctcagtgatatccggtggccaactcccaccaatatctgagtgatcgcctggaaa-cc 6121
Query: 224 acttctctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtcca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6122 acttctctattagatccgatgatgtccttttactatcaaaagtaccatggggagagtcca 6181
Query: 284 cctcgaatataccttcaactctctggttcacgaaattatctgttctttgggaatgttcca 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6182 cctcgaatataccttcaactctctggttcacgaaattatctgttctttgggaatgttcca 6241
Query: 344 gctctaggaaattgttgattcgggatattagttcttgtacggacttactagattgtgatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6242 gctctaggaaattgttgattcgggatattagttcttgtacggacttactagattgtgatt 6301
Query: 404 gtgatgaattaggtcttgagccaatggtatgatttataaattggttactggtactgtgat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6302 gtgatgaattaggtcttgagccaatggtatgatttataaattggttactggtactgtgat 6361
Query: 464 agtttgttttcggagcaacattctcatattctatgacataatttctatagttcaacgaaa 523
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6362 agtttgttttcggggcaacattctcatattctatgacataatttctatagttcaacgaaa 6421
Query: 524 ataaatttggtctataaggattatgggaaaacgactgttgtttgaactttcctcttcttt 583
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 6422 ataaatttggtctataaggattaggggaaaacgactgttgtttgaacttccctcttcttt 6481
Query: 584 cgtcaatgctaaccgcatgtctgatgtgacgaacgatgccgctcctagctgtatagggaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6482 cgtcaatgctaaccgcatgtctgatgtgacgaacgatgccgctcctagctgtatagggaa 6541
Query: 644 agagccgatctataagtataccacatgatttcaccgaatcaaagaggccttgaaaatgta 703
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 6542 agagccgatctaaaagtataccacaagaattcaccgaatcaaagaggccttgaaaatgta 6601
Query: 704 tttcgatctcaatatttcttgaaaacgttttctttaattcatcccccaaatta-tcgcat 762
|||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||||||
Sbjct: 6602 tttcgatctcaatatttcttgaaaacgttttcttaaattcatccaccaaagtagtcgcat 6661
Query: 763 aacttgggtgtccgggctg 781
|||| || ||| |||||||
Sbjct: 6662 aactcggttgtacgggctg 6680
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7519
Number of Sequences: 1807
Number of extensions: 7519
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)