BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZE12FM1.SCF screened BAC_end (975 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig868 488 e-137 >3x_Contig868 Length = 3693 Score = 488 bits (246), Expect = e-137 Identities = 286/293 (97%), Gaps = 5/293 (1%) Strand = Plus / Plus Query: 231 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 cttcagattctcttaatggaatatccaaagagtttggccattgcgccaatggataatcag 69 Query: 291 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 tagaggcgtccattacttcagaatttcctcactatcaagttctcgaacttgtaaggaatc 129 Query: 351 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 ctttcgtgctgagtttcccacacttattcgggtcagtaatgtaaattgttcgttaacacc 189 Query: 411 atgcaaattgttttattccttcaaatttcattatanactnttttcgtttgttttaaactt 470 ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct: 190 atgcaaattgttttattccttcaaatttcattata-acttttttcgtttg-tttaaactt 247 Query: 471 ggtcaaaaatttcatccaaaagatgacttttattggtcaacgtgaacacatat 523 |||||||||||||||||||||||||| ||||| |||| |||||||||||||| Sbjct: 248 -gtcaaaaatttcatccaaaagatgac-tttatgggtc-acgtgaacacatat 297 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,142 Number of Sequences: 1807 Number of extensions: 10142 Number of successful extensions: 93 Number of sequences better than 1.0e-20: 1 length of query: 975 length of database: 10,358,551 effective HSP length: 16 effective length of query: 959 effective length of database: 10,329,639 effective search space: 9906123801 effective search space used: 9906123801 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)