BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZE12RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 825 0.0
>3x_Contig1507
Length = 11359
Score = 825 bits (416), Expect = 0.0
Identities = 504/527 (95%), Gaps = 5/527 (0%)
Strand = Plus / Minus
Query: 50 gtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttccaaaat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10017 gtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttccaaaat 9958
Query: 110 cgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgactacctg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9957 cgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgactacctg 9898
Query: 170 attttctgtaaataccttcggccatcatatattcagggtctgattcgatatagttgatgc 229
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9897 attttctgtaaatac-ttcggccatcatatattcagggtctgattcgatatagttgatgc 9839
Query: 230 atgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaaccagggatg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9838 atgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaaccagggatg 9779
Query: 290 atccatatagagtttgtccatcagaactggaagatgataaactgttccttggaacagagt 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9778 atccatagagagtttgtccatcagaactggaagatgataaactgttccttggaacagagt 9719
Query: 350 cattcgacgcggaatatggaattgggaataagtttcaagtcatcaaattcatttggattc 409
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 9718 cattcgacgcggaatagggaattgggaa-aagtttcaggtcatcaaattcatttggattc 9660
Query: 410 tgtagcattggagcactaatttctatggatttgnaagaattttgattgaccctgccttac 469
||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||
Sbjct: 9659 tgtagcattggagcactaatttctatggatttggaagaatttggattgacc-tgtcttac 9601
Query: 470 attagtattcccacttccgaaaattttc-aaaatcgaagttttgccatactgctattgga 528
||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||||||||
Sbjct: 9600 attagtattcccacttccgaaaagtttccaaaatcgaggttttgcaatactgctattgga 9541
Query: 529 tgttaaaagaaattgggtttttattagggcttaaaccattattgctt 575
||| || | | |||| ||| || ||||||||| | |||||||||||
Sbjct: 9540 tgtagaagggagttgg-tttctagtagggcttagagcattattgctt 9495
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9213
Number of Sequences: 1807
Number of extensions: 9213
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)