BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF01FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1341 1189 0.0
>3x_Contig1341
Length = 7901
Score = 1189 bits (600), Expect = 0.0
Identities = 651/660 (98%), Gaps = 6/660 (0%)
Strand = Plus / Minus
Query: 87 cacaatgtcagggtgaggttgagtaggaattccagtggtcgtattgaagtcataaaccaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4565 cacaatgtcagggtgaggttgagtaggaattccagtggtcgtattgaagtcataaaccaa 4506
Query: 147 ttgttgatagtttttgatatatgttcccttgacagaagattcaccagtatctgatttttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4505 ttgttgatagtttttgatatatgttcccttgacagaagattcaccagtatctgatttttt 4446
Query: 207 cgcatatggattatctctgtacttatagatgtatggaatgtttaccatagagaaccttgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4445 cgcatatggattatctctgtacttatagatgtatggaatgtttaccatagagaaccttgg 4386
Query: 267 aatgggaggcaattgccagtcgaaaggaggtatattagaacttctatcaacaatcatggt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4385 aatgggaggcaattgccagtcgaaaggaggtatattagaacttctatcaacaatcatggt 4326
Query: 327 attcaagttttcgtagggtttagtgtcatagtccggtatactgttcacgtagtctttgaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4325 attcaagttttcgtagggtttagtgtcatagtccggtatactgttcacgtagtctttgaa 4266
Query: 387 gttatcccaatttaacgatttgaaactgttgttatattctttcgcgctgggaagattatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4265 gttatcccaatttaacgatttgaaactgttgttatattctttcgcgctgggaagattatc 4206
Query: 447 caatctcacttgaaaatcggacatttcgcggaatcttatagtattgtttatgattgctac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4205 caatctcacttgaaaatcggacatttcgcggaatcttatagtattgtttatgattgctac 4146
Query: 507 gggcaatactcttaactttttctcttccattccagcggcaatagctttttgtaggttccc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 gggcaatactcttaactttttctcttccattccagcggcaatagctttttgtaggttccc 4086
Query: 567 gttgtgtttcgcaagggtacccttcggtagagatatctttagtagtacagattcatctct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 gttgtgtttcgcaagggtacccttcggtagagatatctttagtagtacagattcatctct 4026
Query: 627 gttagggacccgttctt-caattataggatgttcatttgagaattgtcgaagtatcgttt 685
|||| ||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 4025 gtta-ggaaccgttcttccaattataggatgttcattgaagaa-tgtcgaagtatcgttt 3968
Query: 686 tcatcctgttctggattcaagtgtaattccgagaccatttttcatcaccgtccttgcaat 745
|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct: 3967 tcatcctgttctggattcaagtgtaatt-cgagacca-ttttcatca-cgtccttgcaat 3911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6795
Number of Sequences: 1807
Number of extensions: 6795
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)