BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF01RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1348 1346 0.0
>3x_Contig1348
Length = 6365
Score = 1346 bits (679), Expect = 0.0
Identities = 730/739 (98%), Gaps = 6/739 (0%)
Strand = Plus / Plus
Query: 48 tctgcaaactggatgtctccagtcttcgcataagggtgaaggtgctaaactatatgaagc 107
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2241 tctgcaaactggatgtctccag-cttcgcataagggtgaaggtgctaaactatatgaagc 2299
Query: 108 cgtccaagccattggtatggatctctgtcctgagttaggagtatctattcctgttggtaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 cgtccaagccattggtatggatctctgtcctgagttaggagtatctattcctgttggtaa 2359
Query: 168 ggattctatgtctatgaagatgaaatgggatgacaaagaagttactgctcctttgtcagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 ggattctatgtctatgaagatgaaatgggatgacaaagaagttactgctcctttgtcagt 2419
Query: 228 caccattacagctttcgcgccagtcaacaatacctcaaagacctggacaccagttttgaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2420 caccattacagctttcgcgccagtcaacaatacctcaaagacctggacaccagttttgaa 2479
Query: 288 tagcgaagctggtgacactattttggttcttgttgatttggctgccttgcaggaaaaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 tagcgaagctggtgacactattttggttcttgttgatttggctgccttgcaggaaaaaag 2539
Query: 348 atctttaggttcatccgctttcttacaggtttacaatcaaattggtgacactgcaccaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2540 atctttaggttcatccgctttcttacaggtttacaatcaaattggtgacactgcaccaac 2599
Query: 408 cgtccatgacaataaagtactaagagggtttttggaatcgcttttggacctacataaaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2600 cgtccatgacaataaagtactaagagggtttttggaatcgcttttggacctacataaaac 2659
Query: 468 cgatttggtgttgtcttaccatgacagatcagatggcggtttgttagtcactttacttga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2660 cgatttggtgttgtcttaccatgacagatcagatggcggtttgttagtcactttacttga 2719
Query: 528 aatggcatttgcttcaagatgtggtttagatgttgttattgacaccgttaaggacggaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2720 aatggcatttgcttcaagatgtggtttagatgttgttattgacaccgttaaggacggaaa 2779
Query: 588 tccatttgtaccgctctttaacgaagaattaggtgctgtttt-caaatcaaagagtcttc 646
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2780 tccatttgtaccgctctttaacgaagaattaggtgctgttttccaaatcaaagagtcttc 2839
Query: 647 tctatcagagttccaatctgtcctatacgctcatggtgtctccaatgaatacattttctg 706
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 2840 tctatcagagttccaatctgtcctaaacgctcatggtgtctccaatgaataca-tttctg 2898
Query: 707 ttgtcgctaaaccaaactttgcagcacatcaaattaccattttctgattaagcccggctc 766
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct: 2899 ttgtcgctaaaccaaactttgcagcacatcaaattacca-tttctgataaag-ccggctc 2956
Query: 767 tgcttatttttcaaggcac 785
||| |||||| ||||||||
Sbjct: 2957 tgc-tattttccaaggcac 2974
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6240
Number of Sequences: 1807
Number of extensions: 6240
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)