BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF02RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 1289 0.0
>3x_Contig1713
Length = 18539
Score = 1289 bits (650), Expect = 0.0
Identities = 769/803 (95%), Gaps = 5/803 (0%)
Strand = Plus / Minus
Query: 44 cttctcatgtcacggatatgattcatctgggtcatcattacgatggaaggttcttccgtg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8220 cttctcatgtcacggatatgattcatctgggtcatcattacgatggaaggttcttccgtg 8161
Query: 104 gtggattatctcatagtgaagttagagccagattggatgccattattagagcctggttgc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8160 gtggattatctcatagtgaagttagagccagattggatgccattattagagcctggttgc 8101
Query: 164 atttcactgtttccaatgatcttactgcatggttagctcatggtactttgtactgttggc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8100 atttcactgtttccaatgatcttactgcatggttagctcatggtactttgtacggttggc 8041
Query: 224 tttacaacggattggcgttcacttgggatggtgatcatgacgttcaaatgcctattgctg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8040 tttacaacggattggcgttcacttgggatggtgatcatgacgttcaaatgcctattgctg 7981
Query: 284 atttaaaccgtatggcgaaaaaatttaaccaaaccgttatcgttgaggatcctactagag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7980 atttaaaccgtatggcgaaaaaatttaaccaaaccgttatcgttgaggatcctactagag 7921
Query: 344 gaaacggtagatatttcctcgacgtgggtaccttcatcactgctaggaacaaggggaacg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7920 gaaacggtagatatttcctcgacgtgggtaccttcatcactgctaggaacaaggggaacg 7861
Query: 404 gtttgaataacattgacgccagattcattgacgttgattctggtttgtacgttgatatca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7860 gtttgaataacattgacgccagattcattgacgttgattctggtttgtacgttgatatca 7801
Query: 464 ccggtctttctgtatcttatgaaccaattgccgatagattcgaatggttagtccacaaat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7800 ccggtctttctgtatcttatgaaccaattgccgatagattcgaatggttagtccacaaat 7741
Query: 524 attntaatgatttgaaaactgacccagatcatatgccattctacgatgaccctaacgttg 583
||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 7740 attttaatgatttgaaaactgacccagaacatatgccattctacgaggaccctaacgttg 7681
Query: 584 ttcctaacgtctcatggctcancgttctggatagattgaagtatgaattggcatttaaat 643
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 7680 ttcctaacgtctcagggctcagcgttctggatagattgaagtatgaattggcattaaata 7621
Query: 644 agaccgaaggacaattgaacagagcaaggcatgagtatttgtctcgaaacatcaaag-aa 702
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7620 agaccgaaggacaattgacaagagcaaggcatgagtatttgtctcgaaacatcaaagaaa 7561
Query: 703 gagattagaaagatc-ttattcatcanattc-ctaaaggattagtacaacattaat-aac 759
||||| ||||||| | |||| |||| |||| |||||||| ||||||||||||| |||
Sbjct: 7560 gagataagaaagaactttatcaatcagattcgttaaaggataggtacaacattaataaac 7501
Query: 760 atgctcaagcttacattggtagaattaagcattttcaaactcttttcggactattctcat 819
||||||||||||||| | |||||| ||||||||| |||||||| |||| ||||| ||
Sbjct: 7500 atgctcaagcttacaattgtagaaataagcatttccaaactctattcgaactatctccac 7441
Query: 820 taaggttaaacttttttccatgg 842
||||||| |||||||||||||||
Sbjct: 7440 taaggtt-aacttttttccatgg 7419
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5809
Number of Sequences: 1807
Number of extensions: 5809
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)