BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF03FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 1322 0.0
>3x_Contig1606
Length = 11468
Score = 1322 bits (667), Expect = 0.0
Identities = 739/758 (97%), Gaps = 4/758 (0%)
Strand = Plus / Plus
Query: 86 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5880 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 5939
Query: 146 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 5999
Query: 206 caacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6000 caacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 6059
Query: 266 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6060 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 6119
Query: 326 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6120 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 6179
Query: 386 tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6180 tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 6239
Query: 446 aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6240 aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 6299
Query: 506 tataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6300 tataattccccgccttccgttgtttacctcctccctctcttcattcttagcttaagaaga 6359
Query: 566 aattcatttgaattgcttcttaatgaagtgccagatcaatggagacatccataaagcggc 625
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6360 aattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcggc 6419
Query: 626 agctgcgtaagcagcgttagtcaaagtctggttggattgctgntgatgcaaatctttttc 685
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 6420 agctgcgtaagcagcgttagtcaaagtctggttggattgctgttgatgcaatcttttttc 6479
Query: 686 ttcttcagattggtgcttgagtaggccaaacattattattgattggatttctgatatacg 745
|||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6480 ttcttcagattgttgctgaggtaggccaaacattattattgattgtatttctgatatacg 6539
Query: 746 tcacattcttgttttactggttagactgcgctaataactatacc-atagatagggatat- 803
||||| |||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 6540 tcacaatcttttttaactggttagactgcgctaataactataccaatagatagtgatata 6599
Query: 804 atgcactcatgca-cagc-aaacatgtttgggcatact 839
||||||||||||| |||| ||||||||||| |||||||
Sbjct: 6600 atgcactcatgcagcagcaaaacatgtttgtgcatact 6637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6558
Number of Sequences: 1807
Number of extensions: 6558
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)