BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC41ZF03RM1.SCF screened BAC_end
         (975 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig774                                                         1415   0.0  

>3x_Contig774 
          Length = 2612

 Score = 1415 bits (714), Expect = 0.0
 Identities = 860/895 (96%), Gaps = 11/895 (1%)
 Strand = Plus / Minus

                                                                        
Query: 57   cattccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatgg 116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 cattccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatgg 1964

                                                                        
Query: 117  tatctttggaatatatcctatctggtggatatagtcttggacgtttttcgatccgattct 176
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 tatctttggaatatatcctagctggtggatatagtcttggacgtttttcgatccgattct 1904

                                                                        
Query: 177  tttcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgac 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 tttcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgac 1844

                                                                        
Query: 237  gtaatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccaca 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 gtaatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccaca 1784

                                                                        
Query: 297  agaccatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctct 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 agaccatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctct 1724

                                                                        
Query: 357  gtaccatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgct 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 gtaccatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgct 1664

                                                                        
Query: 417  gtaccctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaag 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 gtaccctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaag 1604

                                                                        
Query: 477  attccctggcttcaaatcacgatggagcacgtctgctgaatgaatatattttaacccaca 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1603 attccctggcttcaaatcacgatggagcacgtctgctgaatgaatatattttaacccaca 1544

                                                                        
Query: 537  aagaatctggtagatgaacgattggtaatgggcatctgttaagggctgacccgattttac 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1543 aagaatctggtagatgaacgattggtaatgggcatctgttaagggctgacccgattttac 1484

                                                                        
Query: 597  aatttgatgcatatcacattccattaattcctcgtaccaatatagaccatttgacatacc 656
            ||||||||||||||||||||||||||||||||||||| |||| ||||||||  |||||||
Sbjct: 1483 aatttgatgcatatcacattccattaattcctcgtacaaataaagaccattgaacatacc 1424

                                                                        
Query: 657  gtccggctggaacacaatatccatatcgtatagacaagtgatatttttatgacctct-aa 715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1423 gtccggctggaacacaatatccatatcgtatagacaagtgatatttttatgacctctaaa 1364

                                                                        
Query: 716  atgtcttanaagnttcagntccctttagagatc-tttgcagagcagagtctttgagaaaa 774
            |||||||| ||| ||||| |||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 1363 atgtcttagaagtttcagttccc-ttagagatcttttgcagagcagagtctttgagaaaa 1305

                                                                        
Query: 775  cgttggttactttctttatagccacccgtgggttcatctgcagctttcatgaatccgggc 834
            ||||||| |||||||| ||||||| |||||| ||||||||||||||   |||| ||||||
Sbjct: 1304 cgttggtaactttcttaatagcca-ccgtggtttcatctgcagcttcagtgaa-ccgggc 1247

                                                                        
Query: 835  agagtcaacaattccgtacggtccatgaccctattt-ttttatcaactgggacccgttta 893
            ||||  |||||| |||||||  |||||| ||||||| ||| ||||||| ||| |||||||
Sbjct: 1246 agagcaaacaatcccgtacgaaccatga-cctatttctttaatcaact-ggaaccgttta 1189

                                                                   
Query: 894  ttcactgtgaagttcctgattaaccactttgnaaagtgggtctattctaccgcat 948
            | |||||||||| |||||||||| ||||||| |||||| ||||| ||||||||||
Sbjct: 1188 tccactgtgaag-tcctgattaaacactttg-aaagtgtgtcta-tctaccgcat 1137


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5966
Number of Sequences: 1807
Number of extensions: 5966
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)