BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZF03RM1.SCF screened BAC_end (975 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig774 1415 0.0 >3x_Contig774 Length = 2612 Score = 1415 bits (714), Expect = 0.0 Identities = 860/895 (96%), Gaps = 11/895 (1%) Strand = Plus / Minus Query: 57 cattccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatgg 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2023 cattccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatgg 1964 Query: 117 tatctttggaatatatcctatctggtggatatagtcttggacgtttttcgatccgattct 176 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1963 tatctttggaatatatcctagctggtggatatagtcttggacgtttttcgatccgattct 1904 Query: 177 tttcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgac 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1903 tttcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgac 1844 Query: 237 gtaatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccaca 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1843 gtaatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccaca 1784 Query: 297 agaccatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctct 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1783 agaccatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctct 1724 Query: 357 gtaccatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgct 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1723 gtaccatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgct 1664 Query: 417 gtaccctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaag 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1663 gtaccctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaag 1604 Query: 477 attccctggcttcaaatcacgatggagcacgtctgctgaatgaatatattttaacccaca 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1603 attccctggcttcaaatcacgatggagcacgtctgctgaatgaatatattttaacccaca 1544 Query: 537 aagaatctggtagatgaacgattggtaatgggcatctgttaagggctgacccgattttac 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1543 aagaatctggtagatgaacgattggtaatgggcatctgttaagggctgacccgattttac 1484 Query: 597 aatttgatgcatatcacattccattaattcctcgtaccaatatagaccatttgacatacc 656 ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct: 1483 aatttgatgcatatcacattccattaattcctcgtacaaataaagaccattgaacatacc 1424 Query: 657 gtccggctggaacacaatatccatatcgtatagacaagtgatatttttatgacctct-aa 715 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1423 gtccggctggaacacaatatccatatcgtatagacaagtgatatttttatgacctctaaa 1364 Query: 716 atgtcttanaagnttcagntccctttagagatc-tttgcagagcagagtctttgagaaaa 774 |||||||| ||| ||||| |||| ||||||||| |||||||||||||||||||||||||| Sbjct: 1363 atgtcttagaagtttcagttccc-ttagagatcttttgcagagcagagtctttgagaaaa 1305 Query: 775 cgttggttactttctttatagccacccgtgggttcatctgcagctttcatgaatccgggc 834 ||||||| |||||||| ||||||| |||||| |||||||||||||| |||| |||||| Sbjct: 1304 cgttggtaactttcttaatagcca-ccgtggtttcatctgcagcttcagtgaa-ccgggc 1247 Query: 835 agagtcaacaattccgtacggtccatgaccctattt-ttttatcaactgggacccgttta 893 |||| |||||| ||||||| |||||| ||||||| ||| ||||||| ||| ||||||| Sbjct: 1246 agagcaaacaatcccgtacgaaccatga-cctatttctttaatcaact-ggaaccgttta 1189 Query: 894 ttcactgtgaagttcctgattaaccactttgnaaagtgggtctattctaccgcat 948 | |||||||||| |||||||||| ||||||| |||||| ||||| |||||||||| Sbjct: 1188 tccactgtgaag-tcctgattaaacactttg-aaagtgtgtcta-tctaccgcat 1137 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5966 Number of Sequences: 1807 Number of extensions: 5966 Number of successful extensions: 40 Number of sequences better than 1.0e-20: 1 length of query: 975 length of database: 10,358,551 effective HSP length: 16 effective length of query: 959 effective length of database: 10,329,639 effective search space: 9906123801 effective search space used: 9906123801 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)