BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF04FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 1320 0.0
>3x_Contig1775
Length = 26320
Score = 1320 bits (666), Expect = 0.0
Identities = 720/737 (97%), Gaps = 1/737 (0%)
Strand = Plus / Minus
Query: 88 ccgcagagaacatttcttacgccatcgcaacagaatcttaacaagacgtacgaagaaatt 147
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23931 ccgcagagaacaattcttacgccatcgcaacagaatcttaacaagacgtacgaagaaatt 23872
Query: 148 aaaggattacctatggtctttactatgggaaaagtttgataaagattttagacaagagag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23871 aaaggattacctatggtctttactatgggaaaagtttgataaagattttagacaagagag 23812
Query: 208 actaaagaggaaaaacatggatgacacaatatatatagatggcgagcagtttctacaaga 267
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 23811 actaaagaggaaaaacatggatgacacaatagatatagatggcgagcagtttctacaaga 23752
Query: 268 agtcgactcatatgtgcttgggtatggtagaagttttaaacaatggattattccagtcga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23751 agtcgactcatatgtgcttgggtatggtagaagttttaaacaatggattattccagtcga 23692
Query: 328 cgaaagtgcgtatagttacaaagacgtggagacattagagttaccagcagacgtttgtat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23691 cgaaagtgcgtatagttacaaagacgtggagacattagagttaccagcagacgtttgtat 23632
Query: 388 cacacaacaggatcttgacagtctgtccaaatttggtattccaacgaacaactatcaagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23631 cacacaacaggatcttgacagtctgtccaaatttggtattccaacgaacaactatcaagt 23572
Query: 448 cgattctcaagattggtatttggattgcaagagtggaaaacacggtattaacgatttcaa 507
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23571 cgattctcaggattggtatttggattgcaagagtggaaaacacggtattaacgatttcaa 23512
Query: 508 gatagtgaaggaccaaaagatagtatgttgtgaaaaaagccatatatgggaactttggga 567
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23511 gaaagtgaaggaccaaaagatagtatgttgtgaaaaaagccatatatgggaactttggga 23452
Query: 568 ggagcaggacccatcagtaatagccatgctttcacatggacatgaccacatgttaacacc 627
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23451 ggagcaggacccatcagtaatagccatcctttcacatggacatgaccacatgttaacacc 23392
Query: 628 cagagaacttggatgggttacgatgtatgacgagaaccttcgtagaagatcttcgagaag 687
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23391 cagagaacttggaggggtaacgatgtatgacgagaaccttcgtagaagatcttcgagaag 23332
Query: 688 ggacgaatcggttaacggccaggcatcttacatcgagaatatgcctacggagagcaaacc 747
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||
Sbjct: 23331 ggacgaatcggttaacggcaaggcatcttacatcgagaataggcctacggagaggaaacc 23272
Query: 748 tttcgatgtcagggaaccctttatctcgtcaggatgnttacttgagatgaaatttgaact 807
||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| ||||||
Sbjct: 23271 tttcgatgtcatggaaccctttatctcgtcaagatgtttacatgagatggaatctgaact 23212
Query: 808 -agacaaaattttgctg 823
||||||||||||||||
Sbjct: 23211 aagacaaaattttgctg 23195
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5738
Number of Sequences: 1807
Number of extensions: 5738
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)