BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF04RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig982 1318 0.0
>3x_Contig982
Length = 3343
Score = 1318 bits (665), Expect = 0.0
Identities = 766/789 (97%), Gaps = 8/789 (1%)
Strand = Plus / Plus
Query: 44 cttggcaaaatcatctgcaatcaactcttccaatcctatttcttgtaagaactctttaga 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 cttggcaaaatcatctgcaatcaactcttccaatcctatttcttgtaagaactctttaga 87
Query: 104 ccaaccgttcttagatccttctactccaagtggcaatagaccttgcttacaaacggtaga 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ccaaccgttcttagatccttctactccaagtggcaatagaccttgcttacaaacggtaga 147
Query: 164 acagtaggatctgatctctgacccggtagctttgaaagttaagtagtcagccatttctaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 148 acagtaggatctgatctctgacccggtagctttgaaagttaagtagtcagccaaatcgaa 207
Query: 224 gaatttgcactgagcaaacttcttctccggaatgttgtttttcaaccatttgatctttgg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaatttgcactgagcaaacttcttctccggaatgttgtttttcaaccatttgatctttgg 267
Query: 284 aatttccatttcaacactcatttggccacctacgtacttcaaacatttatcaccagtggc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatttccatttcaacactcatttggccacctacgtacttcaaacatttatcaccagtggc 327
Query: 344 attaatctcctcggtctcttcgatagctctgtgatccatccacaagattatattttgtaa 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attaatctcctcggtctcttcgatagctctgtgatccatccacaagattatattttgtaa 387
Query: 404 gttgtcagtaaaatcaggaccaacaccgacgtcctcgttgttattatcaacaacgactaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gttgtcagtaaaatcaggaccaacaccgacgtcctcgttgttattatcaacaacgactaa 447
Query: 464 cgaacaagtcgcgtcgaacccaatcccatgaatagttctaggatcgacgccagagtctct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cgaacaagtcgcgtcgaacccaatcccatgaatagttctaggatcgacgccagagtctct 507
Query: 524 gacaacgttcttatcacagtaacagatcgcattccagatctcttgagacgattgagtgat 583
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gacaacgttcttaacacagtaacagatcgcattccagatctcttgagacgattgagtgat 567
Query: 584 atagtttggtttcaactcgtgccttttgatttgcctctcagctagcgaaagaatattccc 643
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 568 atagtttggtttcaactcgtgcctttgaattggcctctcagctagcgaaagaatattccc 627
Query: 644 c-aattatcgatcacacatgcacgcgctgatcctggtacaaacgtc-acacctacatagt 701
| |||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||
Sbjct: 628 caaattatcgatcacacaggcacgcgctgatcct-gtaccaacgtcaacacctacatagt 686
Query: 702 aaaccattttacgctcattttgaagcgatta-ccacttatatagtgggaaagcattctct 760
||||||||||||||||||||||||||||| | ||||| ||| |||||||||||| |||||
Sbjct: 687 aaaccattttacgctcattttgaagcgataacccactcatagagtgggaaagcaatctct 746
Query: 761 gttgcgagatagacaacgaa-aatgtgactttcctcg-accaaacatgttgtttcccttg 818
|||||||||||||||||||| ||||||||||| |||| ||||||||||| | ||||||||
Sbjct: 747 gttgcgagatagacaacgaagaatgtgacttt-ctcgaaccaaacatgtcg-ttcccttg 804
Query: 819 tttaccccg 827
|| ||||||
Sbjct: 805 ttaaccccg 813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,808
Number of Sequences: 1807
Number of extensions: 12808
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)