BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF05FM1.SCF screened BAC_end
(861 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 942 0.0
>3x_Contig1758
Length = 25930
Score = 942 bits (475), Expect = 0.0
Identities = 574/594 (96%), Gaps = 11/594 (1%)
Strand = Plus / Plus
Query: 86 cactatcaagagtcagattctcatcattcatcagatcggcagatcccatagtacctcgtt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 cactatcaagagtcagattctcatcattcatcagatcggcagatcccatagtacctcgtt 3685
Query: 146 taggcttgaagtttttattgattattgtttgattccatatatccataatttgatcaaatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3686 taggcttgaagtttttattgattattgtttgattccatatatccataatttgatcaaatg 3745
Query: 206 tactgtcccttgatatgaaagatgcaaacaggaacttgtcatgtaaggtttgtatcgata 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 tactgtcccttgatatgaaagatgcaaacaggaacttgtcatgtaaggtttgtatcgata 3805
Query: 266 tggcattaggaaataatacggcagtgttcttttgttcgatctgaactatctctttgaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tggcattaggaaataatacggcagtgttcttttgttcgatctgaactatctctttgaatg 3865
Query: 326 gaactacaacagtcttcatccatcccaaaatattcgagtaaaagcaaatgtgtctatcag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 gaactacaacagtcttcatccatcccaaaatattcgagtaaaagcaaatgtgtctatcag 3925
Query: 386 atatgtataacctaccttgaatgagaatatcttttgataaagcacaactgtaatccgcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 atatgtataacctaccttgaatgagaatatcttttgataaagcacaactgtaatccgcta 3985
Query: 446 ttaatctttcaattggagatactacggtgtctttaaagattgtatggaaatctgtattac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ttaatctttcaattggagatactacggtgtctttaaagattgtatggaaatctgtattac 4045
Query: 506 gcttagcacttgcatattcaatgcctttgagttctggttcttca-tttttcttcttattg 564
||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 4046 gcttagcacttgcatattcaatgccttgaagttctggttcttcagtttttctctttattg 4105
Query: 565 g-atgtccg-agttgaca-gcgtgtt-gtccctcaagtggt--gaacatatcactggtct 618
| ||||||| |||||||| ||||||| |||| || ||||| || |||||||||||||
Sbjct: 4106 gaatgtccgaagttgacaggcgtgttggtcctccaggtggttgaaaaatatcactggtct 4165
Query: 619 tggat-tgctactcgctc-tgtcatgttt-tgcccgaaaatg-atttcttaggg 668
||||| |||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 4166 tggatatgctactcgctcttgtcatgtttctgcccgaaaatgaatttcttaggg 4219
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6463
Number of Sequences: 1807
Number of extensions: 6463
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 861
length of database: 10,358,551
effective HSP length: 16
effective length of query: 845
effective length of database: 10,329,639
effective search space: 8728544955
effective search space used: 8728544955
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)