BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF05RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig590 842 0.0
3x_Contig1362 367 e-101
>3x_Contig590
Length = 2287
Score = 842 bits (425), Expect = 0.0
Identities = 532/557 (95%), Gaps = 8/557 (1%)
Strand = Plus / Plus
Query: 313 actctgagtattgcagtgcaattgaacaaagttatcgatcaattgaaagaggagtactta 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actctgagtattgcagtgcaattgaacaaagttatcgatcaattgaaagaggagtactta 60
Query: 373 agacaatattctgatggcacacaatcatccggtgctggcgctcctcatgtgtcatcttca 432
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61 agacaatattctgatggcacacaatcatccggtgctggcgctcctcaggtgtcatcttca 120
Query: 433 tcaagtgctaacctatctctagatcataagaagatcgacttcgctacctcgtggttatcc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaagtgctaacctatctctagatcataagaagatcgacttcgctacctcgtggttatcc 180
Query: 493 aaacaaactcaaccactgagcgatgtctatggtgttcttgaagcaagggtattcaagtct 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaacaaactcaaccactgagcgatgtctatggtgttcttgaagcaagggtattcaagtct 240
Query: 553 cttgaagatatcgtgttcaaattcggagagtgctcataggatggcacggtaaaacaagac 612
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 241 cttgaagaaatcgtgttcaaattcggagagtgctcaaaggatggcacggtaaaacaagac 300
Query: 613 tttatcaacatgtgcggaaacaccaatactgctaccaatgcttctggtaccgcgacatca 672
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 tttatcaacatgtgcggaaacaccaatactgctaccaatgctactggtaccgcgacatca 360
Query: 673 accctaacaatctcaaatgatgattcaacggggtgtttcttctatttttcagtcaccttc 732
|||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 361 accctaccaatctcaaatgatgattcaac-gggtgtttcttctattttccagtcaccttc 419
Query: 733 aaaggc-aacaggacatttac-agc-aggaagagatggaaatttaggaaagcctcgctgc 789
| |||| |||||||||| ||| ||| || |||||||||||||| |||| |||||||||||
Sbjct: 420 agaggcaaacaggacatctacaagcaagaaagagatggaaattaaggagagcctcgctgc 479
Query: 790 gattgatatgggaagaatccgaaacttcctatcggcatttattccccggttgtcaaactt 849
||||||||| |||||||| ||||| |||||||| |||||| | | |||||||| |||||
Sbjct: 480 gattgatat-ggaagaattcgaaaactcctatcgtcattta-tacacggttgtc-aactt 536
Query: 850 tcactggttctgtcttt 866
||||||| |||||||||
Sbjct: 537 tcactgg-tctgtcttt 552
>3x_Contig1362
Length = 8864
Score = 367 bits (185), Expect = e-101
Identities = 194/197 (98%)
Strand = Plus / Minus
Query: 48 attatcttgcagaaagatgttcaaagaataccctacagcattatcattcgaccatgctag 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 attatcttgcagaaagatggtcaaagaataccctacagcattatcattcgaccatgctag 511
Query: 108 attgattttattgcgggcagatattcgtcaaattgtctgtttaatggtttgcaaactatt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 attgattttattgcgggcagatattcgtcaaattgtctgtttaatggtttgcaaactatt 451
Query: 168 attcaaacaacttgtggctaacaacgcggatttgacaagaccaatgaaatattttatcat 227
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 450 attcaaacaacttgtggctaacaacgcggatttgacaagaccaatgaaagaatttatcat 391
Query: 228 caagaattatacaacaa 244
|||||||||||||||||
Sbjct: 390 caagaattatacaacaa 374
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7071
Number of Sequences: 1807
Number of extensions: 7071
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)