BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF06FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1194 892 0.0
>3x_Contig1194
Length = 6435
Score = 892 bits (450), Expect = 0.0
Identities = 532/554 (96%), Gaps = 4/554 (0%)
Strand = Plus / Plus
Query: 90 tcattccactgagttacgaatcatagagcgtacgatagattatattcaactattgccgtt 149
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcattccactgagttacgaatcagagagcgtacgatagattatattcaactattgccgtt 571
Query: 150 gttatagtcgtgtttttttattttttggttattgttttttccaattagcgtcactggttt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gttatagtcgtgtttttttattttttggttattgttttttccaattagcgtcactggttt 631
Query: 210 tttattgtactaatcgacgcatctttaaaacaatggcaaattggttccaacgaacctttc 269
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tttagtgtactaatcgacgcatctttaaaacaatggcaaattggttccaacgaacctttc 691
Query: 270 ttgctaatagaccggctggttctatattggctaatttagaaacgagttttaatcccaaat 329
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 692 ttgctaatagaccggctggttctagattggctaatttagaaacgagttttaatcccaaat 751
Query: 330 taagcatacggaaactaaagaattaccatgcttcatccacagatatatgtcattatgggt 389
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 752 taagcatacggaaactaaagaattaccatgcttcagccacagatatatgtcattatgggt 811
Query: 390 ttttagggagtataatgtttttctcatttgttgtaaatcctgcaccatggatattcaaga 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ttttagggagtataatgtttttctcatttgttgtaaatcctgcaccatggatattcaaga 871
Query: 450 tactcttctattccctttttgctgctactattttgtgattccagccacagttcaattttt 509
||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 872 tactcttctattccc-ttttgctgctacta-tttgtgattccagccacaggtcaattttt 929
Query: 510 cttttatgctcttactatttttgcattgttgtcattatactttacattgtcatcttttga 569
|||| ||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||
Sbjct: 930 ctttaatgctctacctatttttgcatggttgtcattatacttcacatcgtcatcttttga 989
Query: 570 cgctttctacaggccttcgatcaccgtttaagtttttaccagc-atcggaacttttcttt 628
||||| |||||||||| ||||||||||| ||| |||||||||| |||| |||| ||||||
Sbjct: 990 cgcttcctacaggcctccgatcaccgttaaag-ttttaccagcaatcgaaactattcttt 1048
Query: 629 atggggatattttg 642
|||| |||| ||||
Sbjct: 1049 atggtgataatttg 1062
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,592
Number of Sequences: 1807
Number of extensions: 15592
Number of successful extensions: 194
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)