BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC41ZF06RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1201 0.0
>3x_Contig1612
Length = 15608
Score = 1201 bits (606), Expect = 0.0
Identities = 695/713 (97%), Gaps = 9/713 (1%)
Strand = Plus / Minus
Query: 48 gagaaaaggaatccatgcgatggtaacgacgtatttaaaacattgtctgataattggcaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15068 gagaaaaggaatccatgcgatggtaacgacgtatttaaaacattgtctgataattggcaa 15009
Query: 108 tttatcattgagtccttgtccaaattgatagatcatattaagatacaggcaagagaacag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15008 tttatcattgagtccttgtccaaattgatagatcatattaagatacaggcaagagaacag 14949
Query: 168 ttaaacagaagacagactgattttgcgcaaatcatgggagggacctacctcatagaaaat 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 14948 ttaaacagaagacagactgattttgcgcaaatcatgggagggacctacctcagagaaaat 14889
Query: 228 aaacaaaaacttcccgttagtttagctgatatcgttaacgatcagttaatctttctaaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14888 aaacaaaaacttcccgttagtttagctgatatcgttaacgatcagttaatctttctaaga 14829
Query: 288 attcacaaatggaatacgttcatattaacaagattaaaggcagttcaagtagagacagtg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14828 attcacaaatggaatacgttcatattaacaagattaaaggcagttcaagtagagacagtg 14769
Query: 348 gattcggatggtcctaaaggtgcagtcaagccttaaatcttttatagacagtacataaaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14768 gattcggatggtcctaaaggtgcagtcaagccttaaatcttttatagacagtacataaaa 14709
Query: 408 aaattcttctttccataacttaaacttgtagattgcagaactgatataatacttgcgagt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14708 aaattcttctttccataacttaaacttgtagattgcagaactgatataatacttgcgagt 14649
Query: 468 tagtactgctcaatgtgcacttggttgtcttaaatgttgtaattgttgtatatacacat- 526
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14648 tagtactgctcaatgtgcacttggttgtcttaaatgttgtaattgttgtatatacacata 14589
Query: 527 aatgtatgtattgggaatgctactgatattttcctagcaccgtagcgggtaataaaa-gt 585
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 14588 aatgtatgtattgggaatgctactgatattttcctagcaccgtagcggtaaataaaaggt 14529
Query: 586 attggcggcttaaa-gtttagctttacttcgacatcagtgatatcattttgg-aagcagn 643
|||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 14528 attggcggcttaaacgtttagcttaacttcgacatcagtgatatcattttggaaagcagc 14469
Query: 644 caacgcttgtttgacatcgttggcaacgaacttctcaac-tgttgaggagctctaccgac 702
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14468 caacgcttgtttgacatcgttggcaacgaacttctcaacttgttgaggagctctaccgac 14409
Query: 703 aaa-gtggatgggctcaacaatga-tcc-atttatt-cagataggttcgaaga 751
||| |||||||| ||||||||| ||| ||| ||| ||||||||||||||||
Sbjct: 14408 aaaggtggatggctccaacaatgagtccaattcattccagataggttcgaaga 14356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6811
Number of Sequences: 1807
Number of extensions: 6811
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)