BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC41ZF07RM1.SCF screened BAC_end (877 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1785 1061 0.0 >3x_Contig1785 Length = 37935 Score = 1061 bits (535), Expect = 0.0 Identities = 631/646 (97%), Gaps = 14/646 (2%) Strand = Plus / Plus Query: 35 cttcagac-gctttactcgaaatgtaaactatattaaacatgtacactactcaatttaca 93 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2926 cttcagacagctttactcgaaatgtaaactatattaaacatgtacactactcaatttaca 2985 Query: 94 cgttttagatgtattctaatgccagcttcggactttagaatcaaatgcttaaactgccat 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2986 cgttttagatgtattctaatgccagcttcggactttagaatcaaatgcttaaactgccat 3045 Query: 154 atatgaatgagatcacgtgcgttgcatccgaaagactgtaaactaggattccctgagcag 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3046 atatgaatgagatcacgtgcgttgcatccgaaagactgtaaactaggattccctgagcag 3105 Query: 214 acagttatttcattactcttatagagtgcaaatgattaatatattacccgatcaacatga 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3106 acagttatttcattactcttatagagtgcaaatgattaatatattacccgatcaacatga 3165 Query: 274 gcacatcacttaacacgaagaacacaactaactacgtattcaagataagtatctccgtat 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3166 gcacatcacttaacacgaagaacacaactaactacgtattcaagataagtatctccgtat 3225 Query: 334 tttctccggcccgtttagcagcatgtctggattaatactgacagaaatttcagtttttcg 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3226 tttctccggcccgtttagcagcatgtctggattaatactgacagaaatttcagtttttcg 3285 Query: 394 aaagagaaatctcatgaaaatgaaaaaaaaaagctgcgaccatggcaatcagagggaaaa 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3286 aaagagaaatctcatgaaaatgaaaaaaaaaagctgcgaccatggcaatcagagggaaaa 3345 Query: 454 aatagaatgatggataaggaaaattgataatgaaagttgaagattgaaaatcaataattg 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3346 aatagaatgatggataaggaaaattgataatgaaagttgaagattgaaaatcaataattg 3405 Query: 514 gagattttggccttttgagtgcaagttagttgcgattagtggtgctttct-attattc-t 571 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct: 3406 gagattttggccttttgagtgcaagttagttgcgattagtggtgctttctaattattctt 3465 Query: 572 tttat-acatcaactaggaatat--gatatatccataaa-tacttac-ttgact-ttatc 625 ||||| ||||||||||||||||| ||||||||||||| ||||||| |||||| ||||| Sbjct: 3466 tttataacatcaactaggaatattgcatatatccataaattacttactttgactgttatc 3525 Query: 626 tgag-agtgt-accaa-ccgaa-gattttc-tttgttttttttttt 666 |||| ||||| ||||| ||||| ||||||| ||||||||||||||| Sbjct: 3526 tgagaagtgtaaccaacccgaaggattttcttttgttttttttttt 3571 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,753 Number of Sequences: 1807 Number of extensions: 13753 Number of successful extensions: 139 Number of sequences better than 1.0e-20: 1 length of query: 877 length of database: 10,358,551 effective HSP length: 16 effective length of query: 861 effective length of database: 10,329,639 effective search space: 8893819179 effective search space used: 8893819179 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)